Information for 13-MAGGCGACAGCCA (Motif 23)

G T A C C G T A A C T G A T C G T A G C T C A G G C T A A G T C C G T A A T C G A G T C A G T C C T G A
Reverse Opposite:
A G C T A C T G C T A G A T G C A C G T A C T G C A G T A G T C A C T G A T G C A G T C C G A T A C T G
p-value:1e-7
log p-value:-1.829e+01
Information Content per bp:1.778
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.4 +/- 33.5bp
Average Position of motif in Background45.7 +/- 16.1bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:MAGGCGACAGCCA-
-AGGTGNCAGACAG
 G T A C C G T A A C T G A T C G T A G C T C A G G C T A A G T C C G T A A T C G A G T C A G T C C T G A A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:MAGGCGACAGCCA
-AGGTGHCAGACA
 G T A C C G T A A C T G A T C G T A G C T C A G G C T A A G T C C G T A A T C G A G T C A G T C C T G A
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:MAGGCGACAGCCA
---GCCACACCCA
 G T A C C G T A A C T G A T C G T A G C T C A G G C T A A G T C C G T A A T C G A G T C A G T C C T G A
A C G T A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:MAGGCGACAGCCA-
--GGCCACACCCAN
 G T A C C G T A A C T G A T C G T A G C T C A G G C T A A G T C C G T A A T C G A G T C A G T C C T G A A C G T
A C G T A C G T C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G

Klf1/MA0493.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:MAGGCGACAGCCA
--GGCCACACCCA
 G T A C C G T A A C T G A T C G T A G C T C A G G C T A A G T C C G T A A T C G A G T C A G T C C T G A
A C G T A C G T C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:MAGGCGACAGCCA-
------BCAGACWA
 G T A C C G T A A C T G A T C G T A G C T C A G G C T A A G T C C G T A A T C G A G T C A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:MAGGCGACAGCCA-
--GGCCACRCCCMK
 G T A C C G T A A C T G A T C G T A G C T C A G G C T A A G T C C G T A A T C G A G T C A G T C C T G A A C G T
A C G T A C G T C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:MAGGCGACAGCCA-
--SCTGTCAVTCAV
 G T A C C G T A A C T G A T C G T A G C T C A G G C T A A G T C C G T A A T C G A G T C A G T C C T G A A C G T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:MAGGCGACAGCCA--
---GGACCACCCACG
 G T A C C G T A A C T G A T C G T A G C T C A G G C T A A G T C C G T A A T C G A G T C A G T C C T G A A C G T A C G T
A C G T A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:MAGGCGACAGCCA
-AGGTGTCA----
 G T A C C G T A A C T G A T C G T A G C T C A G G C T A A G T C C G T A A T C G A G T C A G T C C T G A
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T