Information for 4-GCGGCACGCC (Motif 18)

C T A G G A T C C A T G A C T G T G A C C T G A A G T C A C T G A G T C T G A C
Reverse Opposite:
A C T G T C A G T G A C T C A G G A C T A C T G A G T C G T A C C T A G G A T C
p-value:1e-8
log p-value:-2.003e+01
Information Content per bp:1.689
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.96%
Number of Background Sequences with motif853.2
Percentage of Background Sequences with motif2.06%
Average Position of motif in Targets57.5 +/- 24.8bp
Average Position of motif in Background49.8 +/- 37.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCGGCACGCC----
NNGGCCACGCCTTTN
 A C G T C T A G G A T C C A T G A C T G T G A C C T G A A G T C A C T G A G T C T G A C A C G T A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCGGCACGCC-
-TBGCACGCAA
 C T A G G A T C C A T G A C T G T G A C C T G A A G T C A C T G A G T C T G A C A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GCGGCACGCC-
---GCACGTNC
 C T A G G A T C C A T G A C T G T G A C C T G A A G T C A C T G A G T C T G A C A C G T
A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GCGGCACGCC-
---GCACGTAY
 C T A G G A T C C A T G A C T G T G A C C T G A A G T C A C T G A G T C T G A C A C G T
A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCGGCACGCC
--BGCACGTA
 C T A G G A T C C A T G A C T G T G A C C T G A A G T C A C T G A G T C T G A C
A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCGGCACGCC
--AGCGCGCC
 C T A G G A T C C A T G A C T G T G A C C T G A A G T C A C T G A G T C T G A C
A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C

PB0094.1_Zfp128_1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCGGCACGCC-----
TTNGGGTACGCCNNANN
 A C G T A C G T C T A G G A T C C A T G A C T G T G A C C T G A A G T C A C T G A G T C T G A C A C G T A C G T A C G T A C G T A C G T
G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

Hes1/MA1099.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCGGCACGCC--
--GGCACGCGTC
 C T A G G A T C C A T G A C T G T G A C C T G A A G T C A C T G A G T C T G A C A C G T A C G T
A C G T A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GCGGCACGCC
----CACGCA
 C T A G G A T C C A T G A C T G T G A C C T G A A G T C A C T G A G T C T G A C
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCGGCACGCC-----
NTCGCGCGCCTTNNN
 C T A G G A T C C A T G A C T G T G A C C T G A A G T C A C T G A G T C T G A C A C G T A C G T A C G T A C G T A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T