Information for 1-AGGCAAYGAWWCW (Motif 2)

C G T A A C T G A C T G A G T C C G T A C G T A A G C T A C T G G T C A C G T A C G A T A G T C C G T A
Reverse Opposite:
C G A T C T A G C G T A C G A T A C G T A G T C C T G A A C G T A C G T A C T G A G T C A G T C A C G T
p-value:1e-14
log p-value:-3.258e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets18.8 +/- 11.9bp
Average Position of motif in Background67.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGGCAAYGAWWCW
-GGCCATAAATCA
 C G T A A C T G A C T G A G T C C G T A C G T A A G C T A C T G G T C A C G T A C G A T A G T C C G T A
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGGCAAYGAWWCW
AAGGCAAGTGT---
 A C G T C G T A A C T G A C T G A G T C C G T A C G T A A G C T A C T G G T C A C G T A C G A T A G T C C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGGCAAYGAWWCW
-GGCCATAAATCA
 C G T A A C T G A C T G A G T C C G T A C G T A A G C T A C T G G T C A C G T A C G A T A G T C C G T A
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGCAAYGAWWCW
CGGAAGTGAAAC-
 C G T A A C T G A C T G A G T C C G T A C G T A A G C T A C T G G T C A C G T A C G A T A G T C C G T A
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGCAAYGAWWCW-
-GGCCATAAATCAC
 C G T A A C T G A C T G A G T C C G T A C G T A A G C T A C T G G T C A C G T A C G A T A G T C C G T A A C G T
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGGCAAYGAWWCW
-GGAAGTGAAAST
 C G T A A C T G A C T G A G T C C G T A C G T A A G C T A C T G G T C A C G T A C G A T A G T C C G T A
A C G T C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGGCAAYGAWWCW-
AAAGGTAATAAAATTT
 A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A G C T A C T G G T C A C G T A C G A T A G T C C G T A A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGGCAAYGAWWCW
NACAGGAAAT------
 A C G T A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A G C T A C T G G T C A C G T A C G A T A G T C C G T A
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

JUN(var.2)/MA0489.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGCAAYGAWWCW-
AGGAGATGACTCAT
 C G T A A C T G A C T G A G T C C G T A C G T A A G C T A C T G G T C A C G T A C G A T A G T C C G T A A C G T
C T G A C T A G C T A G C T G A C T A G T C G A A C G T A C T G C G T A A T G C C G A T G T A C C G T A A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGGCAAYGAWWCW
--GAAATGACTCA
 C G T A A C T G A C T G A G T C C G T A C G T A A G C T A C T G G T C A C G T A C G A T A G T C C G T A
A C G T A C G T C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A