Information for 6-SCCTGGSCCCAGCMTG (Motif 9)

A T G C A G T C A G T C C G A T A C T G C T A G A T C G A T G C G A T C T G A C C T G A T A C G T A G C T G A C A C G T A C T G
Reverse Opposite:
G T A C G T C A A C T G A T C G A G T C G A C T A C T G C T A G A T C G T A G C G A T C A G T C C G T A C T A G C T A G A T C G
p-value:1e-10
log p-value:-2.431e+01
Information Content per bp:1.639
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif4.21%
Number of Background Sequences with motif399.1
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets43.1 +/- 25.9bp
Average Position of motif in Background49.2 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-SCCTGGSCCCAGCMTG
WDNCTGGGCA-------
 A C G T A T G C A G T C A G T C C G A T A C T G C T A G A T C G A T G C G A T C T G A C C T G A T A C G T A G C T G A C A C G T A C T G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--SCCTGGSCCCAGCMTG
TCCCCTGGGGAC------
 A C G T A C G T A T G C A G T C A G T C C G A T A C T G C T A G A T C G A T G C G A T C T G A C C T G A T A C G T A G C T G A C A C G T A C T G
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:SCCTGGSCCCAGCMTG
--CTGTTCCTGG----
 A T G C A G T C A G T C C G A T A C T G C T A G A T C G A T G C G A T C T G A C C T G A T A C G T A G C T G A C A C G T A C T G
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:4
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---SCCTGGSCCCAGCMTG
ATTGCCTGAGGCAAT----
 A C G T A C G T A C G T A T G C A G T C A G T C C G A T A C T G C T A G A T C G A T G C G A T C T G A C C T G A T A C G T A G C T G A C A C G T A C T G
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:forward strand
Alignment:SCCTGGSCCCAGCMTG
-GCTGTG---------
 A T G C A G T C A G T C C G A T A C T G C T A G A T C G A T G C G A T C T G A C C T G A T A C G T A G C T G A C A C G T A C T G
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-SCCTGGSCCCAGCMTG
NNCNTGACCCCGCTCT-
 A C G T A T G C A G T C A G T C C G A T A C T G C T A G A T C G A T G C G A T C T G A C C T G A T A C G T A G C T G A C A C G T A C T G
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:SCCTGGSCCCAGCMTG
SCCTSAGGSCAW----
 A T G C A G T C A G T C C G A T A C T G C T A G A T C G A T G C G A T C T G A C C T G A T A C G T A G C T G A C A C G T A C T G
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---SCCTGGSCCCAGCMTG
ATGCCCTGAGGC-------
 A C G T A C G T A C G T A T G C A G T C A G T C C G A T A C T G C T A G A T C G A T G C G A T C T G A C C T G A T A C G T A G C T G A C A C G T A C T G
G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-SCCTGGSCCCAGCMTG
NGCCTGAGGCN------
 A C G T A T G C A G T C A G T C C G A T A C T G C T A G A T C G A T G C G A T C T G A C C T G A T A C G T A G C T G A C A C G T A C T G
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:10
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---SCCTGGSCCCAGCMTG
GAGCCCTTGTCCCTAA---
 A C G T A C G T A C G T A T G C A G T C A G T C C G A T A C T G C T A G A T C G A T G C G A T C T G A C C T G A T A C G T A G C T G A C A C G T A C T G
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G A C G T A C G T A C G T