Information for 4-CMACCTGCTKAGCTCC (Motif 7)

A G T C G T C A T C G A A T G C T A G C C G A T A T C G A G T C G A C T A C T G C G T A A C T G A T G C C G A T A T G C A G T C
Reverse Opposite:
C T A G T A C G G C T A A T C G T A G C G C A T T G A C C T G A T C A G A T G C C G T A A C T G A T C G A G C T C A G T C T A G
p-value:1e-10
log p-value:-2.500e+01
Information Content per bp:1.673
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif42.7
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets63.5 +/- 18.7bp
Average Position of motif in Background45.2 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CMACCTGCTKAGCTCC
CCCCCTGCTGTG----
 A G T C G T C A T C G A A T G C T A G C C G A T A T C G A G T C G A C T A C T G C G T A A C T G A T G C C G A T A T G C A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CMACCTGCTKAGCTCC
GGCCYCCTGCTGDGH---
 A C G T A C G T A G T C G T C A T C G A A T G C T A G C C G A T A T C G A G T C G A C T A C T G C G T A A C T G A T G C C G A T A T G C A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CMACCTGCTKAGCTCC
---CCTGCTGAGH---
 A G T C G T C A T C G A A T G C T A G C C G A T A T C G A G T C G A C T A C T G C G T A A C T G A T G C C G A T A T G C A G T C
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CMACCTGCTKAGCTCC
NNTCCTGCTGTGNNN-
 A G T C G T C A T C G A A T G C T A G C C G A T A T C G A G T C G A C T A C T G C G T A A C T G A T G C C G A T A T G C A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CMACCTGCTKAGCTCC
TNTCCTGCTGTGNNG-
 A G T C G T C A T C G A A T G C T A G C C G A T A T C G A G T C G A C T A C T G C G T A A C T G A T G C C G A T A T G C A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CMACCTGCTKAGCTCC
TCNCCTGCTGNGNNN-
 A G T C G T C A T C G A A T G C T A G C C G A T A T C G A G T C G A C T A C T G C G T A A C T G A T G C C G A T A T G C A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CMACCTGCTKAGCTCC
SNGCACCTGCHS------
 A C G T A C G T A G T C G T C A T C G A A T G C T A G C C G A T A T C G A G T C G A C T A C T G C G T A A C T G A T G C C G A T A T G C A G T C
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CMACCTGCTKAGCTCC
NCACCTGTN-------
 A G T C G T C A T C G A A T G C T A G C C G A T A T C G A G T C G A C T A C T G C G T A A C T G A T G C C G A T A T G C A G T C
T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CMACCTGCTKAGCTCC
GACCCCCCGCTGCGC---
 A C G T A C G T A G T C G T C A T C G A A T G C T A G C C G A T A T C G A G T C G A C T A C T G C G T A A C T G A T G C C G A T A T G C A G T C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CMACCTGCTKAGCTCC
GACCCCCCGCTGTG----
 A C G T A C G T A G T C G T C A T C G A A T G C T A G C C G A T A T C G A G T C G A C T A C T G C G T A A C T G A T G C C G A T A T G C A G T C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T