Information for 3-CAGRWSCTGYKGCAYA (Motif 5)

A T G C C G T A A C T G C T A G C G T A A T C G A G T C A C G T A C T G A G T C A C T G A C T G A G T C C G T A A G C T C G T A
Reverse Opposite:
A C G T C T G A C G A T A C T G A G T C G T A C T C A G A G T C C G T A A C T G A T G C C G A T A G T C A G T C A C G T A T C G
p-value:1e-11
log p-value:-2.665e+01
Information Content per bp:1.845
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.6 +/- 26.9bp
Average Position of motif in Background65.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT2/MA0744.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAGRWSCTGYKGCAYA
--CCACCTGTTGCAT-
 A T G C C G T A A C T G C T A G C G T A A T C G A G T C A C G T A C T G A G T C A C T G A C T G A G T C C G T A A G C T C G T A
A C G T A C G T T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAGRWSCTGYKGCAYA
NNNNAGCAGCTGCTGAN--
 A C G T A C G T A C G T A T G C C G T A A C T G C T A G C G T A A T C G A G T C A C G T A C T G A G T C A C T G A C T G A G T C C G T A A G C T C G T A
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CAGRWSCTGYKGCAYA
-AGATGCTRCTRCCHT
 A T G C C G T A A C T G C T A G C G T A A T C G A G T C A C G T A C T G A G T C A C T G A C T G A G T C C G T A A G C T C G T A
A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CAGRWSCTGYKGCAYA
-----GCTGTG-----
 A T G C C G T A A C T G C T A G C G T A A T C G A G T C A C G T A C T G A G T C A C T G A C T G A G T C C G T A A G C T C G T A
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAGRWSCTGYKGCAYA
ANCCACCTGTTGCNC-
 A T G C C G T A A C T G C T A G C G T A A T C G A G T C A C G T A C T G A G T C A C T G A C T G A G T C C G T A A G C T C G T A
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAGRWSCTGYKGCAYA
-AGCAGCTGCT-----
 A T G C C G T A A C T G C T A G C G T A A T C G A G T C A C G T A C T G A G T C A C T G A C T G A G T C C G T A A G C T C G T A
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGRWSCTGYKGCAYA
NNAGCAGCTGCT-----
 A C G T A T G C C G T A A C T G C T A G C G T A A T C G A G T C A C G T A C T G A G T C A C T G A C T G A G T C C G T A A G C T C G T A
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T

Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CAGRWSCTGYKGCAYA
---HTGCTGAGTCAT-
 A T G C C G T A A C T G C T A G C G T A A T C G A G T C A C G T A C T G A G T C A C T G A C T G A G T C C G T A A G C T C G T A
A C G T A C G T A C G T G T C A G C A T A C T G G T A C G A C T A C T G G C T A A T C G C A G T G T A C C G T A A G C T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAGRWSCTGYKGCAYA
CAGCAGCTGN------
 A T G C C G T A A C T G C T A G C G T A A T C G A G T C A C G T A C T G A G T C A C T G A C T G A G T C C G T A A G C T C G T A
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CAGRWSCTGYKGCAYA
-CGCAGCTGCG-----
 A T G C C G T A A C T G C T A G C G T A A T C G A G T C A C G T A C T G A G T C A C T G A C T G A G T C C G T A A G C T C G T A
A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T