p-value: | 1e-10 |
log p-value: | -2.320e+01 |
Information Content per bp: | 1.810 |
Number of Target Sequences with motif | 5.0 |
Percentage of Target Sequences with motif | 0.81% |
Number of Background Sequences with motif | 2.7 |
Percentage of Background Sequences with motif | 0.01% |
Average Position of motif in Targets | 42.7 +/- 26.4bp |
Average Position of motif in Background | 61.5 +/- 4.3bp |
Strand Bias (log2 ratio + to - strand density) | 2.3 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer
Match Rank: | 1 |
Score: | 0.66 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | TGYTTGCAGACAC--- -ATTTGCATACAATGG |
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Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer
Match Rank: | 2 |
Score: | 0.66 |
Offset: | 5 |
Orientation: | reverse strand |
Alignment: | TGYTTGCAGACAC-- -----CCAGACRSVB |
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Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer
Match Rank: | 3 |
Score: | 0.64 |
Offset: | 5 |
Orientation: | reverse strand |
Alignment: | TGYTTGCAGACAC -----BCAGACWA |
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Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer
Match Rank: | 4 |
Score: | 0.64 |
Offset: | 5 |
Orientation: | reverse strand |
Alignment: | TGYTTGCAGACAC -----CCAGACAG |
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PB0145.1_Mafb_2/Jaspar
Match Rank: | 5 |
Score: | 0.61 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | TGYTTGCAGACAC-- CAATTGCAAAAATAT |
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PB0060.1_Smad3_1/Jaspar
Match Rank: | 6 |
Score: | 0.61 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | TGYTTGCAGACAC---- CAAATCCAGACATCACA |
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FOXP3/MA0850.1/Jaspar
Match Rank: | 7 |
Score: | 0.58 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TGYTTGCAGACAC TGTTTAC------ |
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Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer
Match Rank: | 8 |
Score: | 0.58 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --TGYTTGCAGACAC-- NSTGTTTRCWCAGBNNN |
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PB0044.1_Mtf1_1/Jaspar
Match Rank: | 9 |
Score: | 0.58 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TGYTTGCAGACAC--- NNTTTGCACACGGCCC |
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Hand1::Tcf3/MA0092.1/Jaspar
Match Rank: | 10 |
Score: | 0.58 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | TGYTTGCAGACAC --ATGCCAGACN- |
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