Information for 1-GGCCAGCCTTCAC (Motif 1)

T A C G C A T G A G T C G T A C C G T A A T C G A T G C A G T C C G A T A C G T A G T C G C T A A T G C
Reverse Opposite:
T A C G C G A T C T A G G T C A C G T A A C T G A T C G A T G C A C G T A C T G A C T G G T A C A T G C
p-value:1e-14
log p-value:-3.287e+01
Information Content per bp:1.782
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.43%
Number of Background Sequences with motif60.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets41.9 +/- 22.2bp
Average Position of motif in Background48.3 +/- 37.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGCCAGCCTTCAC
--BCAGACWA---
 T A C G C A T G A G T C G T A C C G T A A T C G A T G C A G T C C G A T A C G T A G T C G C T A A T G C
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGCCAGCCTTCAC
---CAGCC-----
 T A C G C A T G A G T C G T A C C G T A A T C G A T G C A G T C C G A T A C G T A G T C G C T A A T G C
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GGCCAGCCTTCAC
------GCTTCC-
 T A C G C A T G A G T C G T A C C G T A A T C G A T G C A G T C C G A T A C G T A G T C G C T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGCCAGCCTTCAC
-GYCATCMATCAT
 T A C G C A T G A G T C G T A C C G T A A T C G A T G C A G T C C G A T A C G T A G T C G C T A A T G C
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

TGIF1/MA0796.1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGCCAGCCTTCAC
TGACAGCTGTCA-
 T A C G C A T G A G T C G T A C C G T A A T C G A T G C A G T C C G A T A C G T A G T C G C T A A T G C
G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A A C G T

POL002.1_INR/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGCCAGCCTTCAC
--TCAGTCTT---
 T A C G C A T G A G T C G T A C C G T A A T C G A T G C A G T C C G A T A C G T A G T C G C T A A T G C
A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GGCCAGCCTTCAC
ACTATGCCAACCTACC-
 A C G T A C G T A C G T A C G T T A C G C A T G A G T C G T A C C G T A A T C G A T G C A G T C C G A T A C G T A G T C G C T A A T G C
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T

SP2/MA0516.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGCCAGCCTTCAC--
GCCCCGCCCCCTCCC
 T A C G C A T G A G T C G T A C C G T A A T C G A T G C A G T C C G A T A C G T A G T C G C T A A T G C A C G T A C G T
A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGCCAGCCTTCAC-
CAAATCCAGACATCACA
 A C G T A C G T A C G T T A C G C A T G A G T C G T A C C G T A A T C G A T G C A G T C C G A T A C G T A G T C G C T A A T G C A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGCCAGCCTTCAC
-CACAGN------
 T A C G C A T G A G T C G T A C C G T A A T C G A T G C A G T C C G A T A C G T A G T C G C T A A T G C
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T