Information for 6-RAAWMATGGMAGG (Motif 9)

C T G A C G T A C G T A C G A T T G C A C G T A A C G T A C T G A C T G G T A C C G T A A C T G A C T G
Reverse Opposite:
G T A C A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C G T C G T A A C G T A C G T A G C T
p-value:1e-9
log p-value:-2.172e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets69.6 +/- 16.4bp
Average Position of motif in Background68.1 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:RAAWMATGGMAGG
-CAAGATGGCGGC
 C T G A C G T A C G T A C G A T T G C A C G T A A C G T A C T G A C T G G T A C C G T A A C T G A C T G
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RAAWMATGGMAGG
VRAACAATGG----
 A C G T C T G A C G T A C G T A C G A T T G C A C G T A A C G T A C T G A C T G G T A C C G T A A C T G A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:RAAWMATGGMAGG
GAACAATGGN---
 C T G A C G T A C G T A C G A T T G C A C G T A A C G T A C T G A C T G G T A C C G T A A C T G A C T G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:RAAWMATGGMAGG
GAACAATGG----
 C T G A C G T A C G T A C G A T T G C A C G T A A C G T A C T G A C T G G T A C C G T A A C T G A C T G
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RAAWMATGGMAGG
RAACAATGGN---
 C T G A C G T A C G T A C G A T T G C A C G T A A C G T A C T G A C T G G T A C C G T A A C T G A C T G
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:RAAWMATGGMAGG-
---TAATGGCGGNC
 C T G A C G T A C G T A C G A T T G C A C G T A A C G T A C T G A C T G G T A C C G T A A C T G A C T G A C G T
A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---RAAWMATGGMAGG
AATGAACAATGGAATT
 A C G T A C G T A C G T C T G A C G T A C G T A C G A T T G C A C G T A A C G T A C T G A C T G G T A C C G T A A C T G A C T G
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--RAAWMATGGMAGG
GAAAAAATTGCAAGG
 A C G T A C G T C T G A C G T A C G T A C G A T T G C A C G T A A C G T A C T G A C T G G T A C C G T A A C T G A C T G
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RAAWMATGGMAGG
-CAAGATGGCGGC
 C T G A C G T A C G T A C G A T T G C A C G T A A C G T A C T G A C T G G T A C C G T A A C T G A C T G
A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:RAAWMATGGMAGG
-AACAAAGG----
 C T G A C G T A C G T A C G A T T G C A C G T A A C G T A C T G A C T G G T A C C G T A A C T G A C T G
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T