Information for 2-CCAGCCCTGGHGG (Motif 5)

G A T C A T G C G C T A C T A G A G T C G T A C T A G C C A G T A C T G C T A G G C T A A C T G C A T G
Reverse Opposite:
G T A C G T A C C G A T G A T C A G T C G C T A A T C G C A T G A C T G A G T C C G A T A T C G C A T G
p-value:1e-10
log p-value:-2.494e+01
Information Content per bp:1.748
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.22%
Number of Background Sequences with motif62.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets50.9 +/- 26.0bp
Average Position of motif in Background52.6 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCAGCCCTGGHGG--
--TGCCCTGAGGGCA
 G A T C A T G C G C T A C T A G A G T C G T A C T A G C C A G T A C T G C T A G G C T A A C T G C A T G A C G T A C G T
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCAGCCCTGGHGG--
--TGCCCTGAGGGCA
 G A T C A T G C G C T A C T A G A G T C G T A C T A G C C A G T A C T G C T A G G C T A A C T G C A T G A C G T A C G T
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCAGCCCTGGHGG--
--TGCCCTGAGGGCA
 G A T C A T G C G C T A C T A G A G T C G T A C T A G C C A G T A C T G C T A G G C T A A C T G C A T G A C G T A C G T
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCAGCCCTGGHGG-
CCCCCCCGGGGGNN
 G A T C A T G C G C T A C T A G A G T C G T A C T A G C C A G T A C T G C T A G G C T A A C T G C A T G A C G T
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PB0102.1_Zic2_1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCCCTGGHGG-
ACCCCCCCGGGGGGN
 A C G T G A T C A T G C G C T A C T A G A G T C G T A C T A G C C A G T A C T G C T A G G C T A A C T G C A T G A C G T
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

PB0103.1_Zic3_1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCCCTGGHGG-
NCCCCCCCGGGGGGN
 A C G T G A T C A T G C G C T A C T A G A G T C G T A C T A G C C A G T A C T G C T A G G C T A A C T G C A T G A C G T
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCCCTGGHGG
CCCCCTGCTGTG----
 A C G T A C G T A C G T G A T C A T G C G C T A C T A G A G T C G T A C T A G C C A G T A C T G C T A G G C T A A C T G C A T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCAGCCCTGGHGG
-ATGCCCTGAGGC
 G A T C A T G C G C T A C T A G A G T C G T A C T A G C C A G T A C T G C T A G G C T A A C T G C A T G
A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCCCTGGHGG
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T G A T C A T G C G C T A C T A G A G T C G T A C T A G C C A G T A C T G C T A G G C T A A C T G C A T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCAGCCCTGGHGG
--TGCCCAGNHW-
 G A T C A T G C G C T A C T A G A G T C G T A C T A G C C A G T A C T G C T A G G C T A A C T G C A T G
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T