Information for 2-GAAGTTGGTGCCAGGC (Motif 4)

A T C G C G T A C T G A C A T G A G C T A C G T A C T G T A C G G A C T C A T G A T G C A G T C C G T A A C T G A C T G A G T C
Reverse Opposite:
T A C G G T A C A G T C C G A T T C A G A T C G G T A C C T G A A T G C A G T C G T C A T C G A G T A C A G C T G C A T A T G C
p-value:1e-11
log p-value:-2.720e+01
Information Content per bp:1.770
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.8 +/- 9.9bp
Average Position of motif in Background69.7 +/- 4.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GAAGTTGGTGCCAGGC-
-----AGGTGHCAGACA
 A T C G C G T A C T G A C A T G A G C T A C G T A C T G T A C G G A C T C A T G A T G C A G T C C G T A A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GAAGTTGGTGCCAGGC--
-----AGGTGNCAGACAG
 A T C G C G T A C T G A C A T G A G C T A C G T A C T G T A C G G A C T C A T G A T G C A G T C C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GAAGTTGGTGCCAGGC
----CTGTTGCTAGGS
 A T C G C G T A C T G A C A T G A G C T A C G T A C T G T A C G G A C T C A T G A T G C A G T C C G T A A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.51
Offset:10
Orientation:reverse strand
Alignment:GAAGTTGGTGCCAGGC--
----------CTAGGCCT
 A T C G C G T A C T G A C A T G A G C T A C G T A C T G T A C G G A C T C A T G A T G C A G T C C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GAAGTTGGTGCCAGGC----
-----KGTTGCTAGGMAACA
 A T C G C G T A C T G A C A T G A G C T A C G T A C T G T A C G G A C T C A T G A T G C A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:GAAGTTGGTGCCAGGC--
----------CNAGGCCT
 A T C G C G T A C T G A C A T G A G C T A C G T A C T G T A C G G A C T C A T G A T G C A G T C C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GAAGTTGGTGCCAGGC
AGATGCTRCTRCCHT--
 A C G T A T C G C G T A C T G A C A T G A G C T A C G T A C T G T A C G G A C T C A T G A T G C A G T C C G T A A C T G A C T G A G T C
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.49
Offset:10
Orientation:reverse strand
Alignment:GAAGTTGGTGCCAGGC--
----------CCAGACAG
 A T C G C G T A C T G A C A T G A G C T A C G T A C T G T A C G G A C T C A T G A T G C A G T C C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GAAGTTGGTGCCAGGC
---GGTGYTGACAGS-
 A T C G C G T A C T G A C A T G A G C T A C G T A C T G T A C G G A C T C A T G A T G C A G T C C G T A A C T G A C T G A G T C
A C G T A C G T A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.48
Offset:10
Orientation:reverse strand
Alignment:GAAGTTGGTGCCAGGC--
----------BCAGACWA
 A T C G C G T A C T G A C A T G A G C T A C G T A C T G T A C G G A C T C A T G A T G C A G T C C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A