Information for 6-AGTTGGAGAC (Motif 19)

C G T A A C T G A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T A G T C A G T C C G T A C G T A A G T C A C G T
p-value:1e-5
log p-value:-1.316e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.0 +/- 24.3bp
Average Position of motif in Background76.4 +/- 10.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGTTGGAGAC-----
CTACTTGGATACGGAAT
 A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGTTGGAGAC--
GGTTAGAGACCT
 C G T A A C T G A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C G T
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

PB0150.1_Mybl1_2/Jaspar

Match Rank:3
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AGTTGGAGAC
CACGGCAGTTGGTNN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTTGGAGAC-
AGGTGHCAGACA
 A C G T C G T A A C T G A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PB0158.1_Rfx3_2/Jaspar

Match Rank:5
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGTTGGAGAC-------
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGTTGGAGAC
TGGCAGTTGG----
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------AGTTGGAGAC
NNNTGGCAGTTGGTNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGTTGGAGAC--
AGGTGNCAGACAG
 A C G T C G T A A C T G A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGTTGGAGAC--
RGTTAGTGCCCY
 C G T A A C T G A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C G T
C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGTTGGAGAC
---TGGGGA-
 C G T A A C T G A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C
A C G T A C G T A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T