Information for 5-CCTGCYGTGACGGCAC (Motif 12)

A G T C A T G C A C G T A C T G A G T C A G C T A T C G A C G T A T C G G T C A G T A C C A T G T A C G A T G C C G T A A T G C
Reverse Opposite:
T A C G G C A T A T C G A T G C G T A C C A T G A C G T A T G C C G T A A T G C C T G A A C T G A G T C C G T A A T C G T C A G
p-value:1e-8
log p-value:-1.918e+01
Information Content per bp:1.718
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif11.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.3 +/- 21.7bp
Average Position of motif in Background25.3 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCYGTGACGGCAC
CCCCCTGCTGTG-------
 A C G T A C G T A C G T A G T C A T G C A C G T A C T G A G T C A G C T A T C G A C G T A T C G G T C A G T A C C A T G T A C G A T G C C G T A A T G C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCYGTGACGGCAC
TNTCCTGCTGTGNNG----
 A C G T A C G T A C G T A G T C A T G C A C G T A C T G A G T C A G C T A T C G A C G T A T C G G T C A G T A C C A T G T A C G A T G C C G T A A T G C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCYGTGACGGCAC
GGCCYCCTGCTGDGH------
 A C G T A C G T A C G T A C G T A C G T A G T C A T G C A C G T A C T G A G T C A G C T A T C G A C G T A T C G G T C A G T A C C A T G T A C G A T G C C G T A A T G C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCYGTGACGGCAC
TCNCCTGCTGNGNNN----
 A C G T A C G T A C G T A G T C A T G C A C G T A C T G A G T C A G C T A T C G A C G T A T C G G T C A G T A C C A T G T A C G A T G C C G T A A T G C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCYGTGACGGCAC
NNTCCTGCTGTGNNN----
 A C G T A C G T A C G T A G T C A T G C A C G T A C T G A G T C A G C T A T C G A C G T A T C G G T C A G T A C C A T G T A C G A T G C C G T A A T G C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCTGCYGTGACGGCAC
CCTGCTGAGH------
 A G T C A T G C A C G T A C T G A G T C A G C T A T C G A C G T A T C G G T C A G T A C C A T G T A C G A T G C C G T A A T G C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCYGTGACGGCAC-
RAAWNTGCTGASTCAGCANW
 A C G T A C G T A C G T A G T C A T G C A C G T A C T G A G T C A G C T A T C G A C G T A T C G G T C A G T A C C A T G T A C G A T G C C G T A A T G C A C G T
C T G A C G T A C G T A C G T A G A T C C G A T T A C G G T A C G C A T C A T G C G T A A T G C G C A T G T A C C G T A C A T G A T G C G C T A C T G A G C A T

CRE(bZIP)/Promoter/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CCTGCYGTGACGGCAC
----CGGTGACGTCAC
 A G T C A T G C A C G T A C T G A G T C A G C T A T C G A C G T A T C G G T C A G T A C C A T G T A C G A T G C C G T A A T G C
A C G T A C G T A C G T A C G T A T G C A T C G T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C

MAFG/MA0659.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCTGCYGTGACGGCAC---
AAATTGCTGAGTCAGCATATT
 A C G T A C G T A G T C A T G C A C G T A C T G A G T C A G C T A T C G A C G T A T C G G T C A G T A C C A T G T A C G A T G C C G T A A T G C A C G T A C G T A C G T
C G T A C G T A G C T A C G A T G A C T T A C G G T A C G A C T C A T G G C T A A T C G C A G T G T A C C T G A C A T G A T G C C T G A G C A T C G T A G C A T G C A T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CCTGCYGTGACGGCAC
----CNGTCACGCCAC
 A G T C A T G C A C G T A C T G A G T C A G C T A T C G A C G T A T C G G T C A G T A C C A T G T A C G A T G C C G T A A T G C
A C G T A C G T A C G T A C G T G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C