Information for 1-CTGCAGGCCAAACACC (Motif 1)

G T A C A C G T A C T G T A G C C G T A C T A G A T C G A T G C A G T C C G T A C T G A C G T A A T G C C T G A G T A C A G T C
Reverse Opposite:
C T A G A C T G A G C T A T C G A C G T A G C T A C G T A C T G A T C G A T G C A G T C C G A T A C T G T G A C G T C A A C T G
p-value:1e-14
log p-value:-3.347e+01
Information Content per bp:1.779
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.5 +/- 17.2bp
Average Position of motif in Background26.2 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTGCAGGCCAAACACC-
--AGAGTCCAAAGTCCA
 G T A C A C G T A C T G T A G C C G T A C T A G A T C G A T G C A G T C C G T A C T G A C G T A A T G C C T G A G T A C A G T C A C G T
A C G T A C G T C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTGCAGGCCAAACACC-
-CANAGNNCAAAGTCCA
 G T A C A C G T A C T G T A G C C G T A C T A G A T C G A T G C A G T C C G T A C T G A C G T A A T G C C T G A G T A C A G T C A C G T
A C G T G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:CTGCAGGCCAAACACC-
-------CCAGACRSVB
 G T A C A C G T A C T G T A G C C G T A C T A G A T C G A T G C A G T C C G T A C T G A C G T A A T G C C T G A G T A C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTGCAGGCCAAACACC--
----AGGTCANTGACCTN
 G T A C A C G T A C T G T A G C C G T A C T A G A T C G A T G C A G T C C G T A C T G A C G T A A T G C C T G A G T A C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

Hnf4a/MA0114.3/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTGCAGGCCAAACACC---
---GGGGTCAAAGTCCAAT
 G T A C A C G T A C T G T A G C C G T A C T A G A T C G A T G C A G T C C G T A C T G A C G T A A T G C C T G A G T A C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CTGCAGGCCAAACACC
-------CCAGACAG-
 G T A C A C G T A C T G T A G C C G T A C T A G A T C G A T G C A G T C C G T A C T G A C G T A A T G C C T G A G T A C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGCAGGCCAAACACC
NNNVCTGWGYAAACASN
 A C G T G T A C A C G T A C T G T A G C C G T A C T A G A T C G A T G C A G T C C G T A C T G A C G T A A T G C C T G A G T A C A G T C
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CTGCAGGCCAAACACC
-----TGCCAA-----
 G T A C A C G T A C T G T A G C C G T A C T A G A T C G A T G C A G T C C G T A C T G A C G T A A T G C C T G A G T A C A G T C
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTGCAGGCCAAACACC---
--CAAATCCAGACATCACA
 G T A C A C G T A C T G T A G C C G T A C T A G A T C G A T G C A G T C C G T A C T G A C G T A A T G C C T G A G T A C A G T C A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CTGCAGGCCAAACACC-
-----GGACACACCCCC
 G T A C A C G T A C T G T A G C C G T A C T A G A T C G A T G C A G T C C G T A C T G A C G T A A T G C C T G A G T A C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G G T C A A G T C G T C A A G T C C T G A A G T C G T A C G A T C G T A C A G T C