Information for 3-TGCCAAGGAAACA (Motif 3)

G A C T T A C G G T A C A G T C G C T A C G T A C A T G C A T G T G C A G T C A C G T A A T G C T G C A
Reverse Opposite:
A C G T A T C G A C G T C A G T A C G T G T A C G A T C G C A T C G A T C T A G C A T G A T G C C T G A
p-value:1e-19
log p-value:-4.591e+01
Information Content per bp:1.660
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.83%
Number of Background Sequences with motif316.7
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets41.9 +/- 26.6bp
Average Position of motif in Background48.3 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAAGGAAACA
TTGCCATGGCAACC
 A C G T G A C T T A C G G T A C A G T C G C T A C G T A C A T G C A T G T G C A G T C A C G T A A T G C T G C A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAAGGAAACA
TTGCCATGGCAACN
 A C G T G A C T T A C G G T A C A G T C G C T A C G T A C A T G C A T G T G C A G T C A C G T A A T G C T G C A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:3
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAGGAAACA
GTTGCCATGGCAACM
 A C G T A C G T G A C T T A C G G T A C A G T C G C T A C G T A C A T G C A T G T G C A G T C A C G T A A T G C T G C A
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAGGAAACA
GTTGCCATGGCAAC-
 A C G T A C G T G A C T T A C G G T A C A G T C G C T A C G T A C A T G C A T G T G C A G T C A C G T A A T G C T G C A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAAGGAAACA-
GTTGCCATGGCAACCG
 A C G T A C G T G A C T T A C G G T A C A G T C G C T A C G T A C A T G C A T G T G C A G T C A C G T A A T G C T G C A A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX5/MA0510.2/Jaspar

Match Rank:6
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TGCCAAGGAAACA
NGTTGCCATGGCAACG
 A C G T A C G T A C G T G A C T T A C G G T A C A G T C G C T A C G T A C A T G C A T G T G C A G T C A C G T A A T G C T G C A
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:7
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TGCCAAGGAAACA
CGTTGCCATGGCAACG
 A C G T A C G T A C G T G A C T T A C G G T A C A G T C G C T A C G T A C A T G C A T G T G C A G T C A C G T A A T G C T G C A
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TGCCAAGGAAACA
CGTTGCCATGGCAACG
 A C G T A C G T A C G T G A C T T A C G G T A C A G T C G C T A C G T A C A T G C A T G T G C A G T C A C G T A A T G C T G C A
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:9
Score:0.70
Offset:6
Orientation:reverse strand
Alignment:TGCCAAGGAAACA-
------GTAAACAG
 G A C T T A C G G T A C A G T C G C T A C G T A C A T G C A T G T G C A G T C A C G T A A T G C T G C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C A G T G T C A C G T A C T G A A G T C C G T A T A C G

RFX4/MA0799.1/Jaspar

Match Rank:10
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TGCCAAGGAAACA
CGTTGCCATGGCAACG
 A C G T A C G T A C G T G A C T T A C G G T A C A G T C G C T A C G T A C A T G C A T G T G C A G T C A C G T A A T G C T G C A
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G