Information for 6-CCTGCTGGCH (Motif 18)

G A T C G T A C A C G T C T A G A T G C C G A T A C T G A C T G A G T C G C A T
Reverse Opposite:
C G T A A C T G A G T C G T A C C G T A A T C G G A T C G T C A A C T G C T A G
p-value:1e-6
log p-value:-1.504e+01
Information Content per bp:1.791
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.54%
Number of Background Sequences with motif302.0
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets52.7 +/- 29.6bp
Average Position of motif in Background49.3 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGGCH
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T G A T C G T A C A C G T C T A G A T G C C G A T A C T G A C T G A G T C G C A T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGCH
CCCCCTGCTGTG-
 A C G T A C G T A C G T G A T C G T A C A C G T C T A G A T G C C G A T A C T G A C T G A G T C G C A T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGCH--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T G A T C G T A C A C G T C T A G A T G C C G A T A C T G A C T G A G T C G C A T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGCH--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T G A T C G T A C A C G T C T A G A T G C C G A T A C T G A C T G A G T C G C A T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCTGCTGGCH
CCTGCTGAGH
 G A T C G T A C A C G T C T A G A T G C C G A T A C T G A C T G A G T C G C A T
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCTGCTGGCH-
--TNNGGGCAG
 G A T C G T A C A C G T C T A G A T G C C G A T A C T G A C T G A G T C G C A T A C G T
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CCTGCTGGCH--
---NTTGGCANN
 G A T C G T A C A C G T C T A G A T G C C G A T A C T G A C T G A G T C G C A T A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.64
Offset:-8
Orientation:reverse strand
Alignment:--------CCTGCTGGCH-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G T A C A C G T C T A G A T G C C G A T A C T G A C T G A G T C G C A T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CCTGCTGGCH
----TTGGCA
 G A T C G T A C A C G T C T A G A T G C C G A T A C T G A C T G A G T C G C A T
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCTGCTGGCH
TGCCCCCGGGCA
 A C G T A C G T G A T C G T A C A C G T C T A G A T G C C G A T A C T G A C T G A G T C G C A T
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A