Information for 6-GGAGAACAAGTAC (Motif 4)

A C T G C T A G C G T A A C T G C G T A C G T A A G T C C T G A C G T A A C T G A C G T C G T A A G T C
Reverse Opposite:
A C T G C G A T C G T A A G T C A C G T A G C T C T A G A C G T A C G T A G T C C G A T A G T C G T A C
p-value:1e-13
log p-value:-3.144e+01
Information Content per bp:1.884
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.2 +/- 26.9bp
Average Position of motif in Background47.5 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0062.1_Sox12_1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GGAGAACAAGTAC
NTTNAGAACAATTA-
 A C G T A C G T A C T G C T A G C G T A A C T G C G T A C G T A A G T C C T G A C G T A A C T G A C G T C G T A A G T C
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGAGAACAAGTAC--
NNNTAACAATTATAN
 A C T G C T A G C G T A A C T G C G T A C G T A A G T C C T G A C G T A A C T G A C G T C G T A A G T C A C G T A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

PB0072.1_Sox5_1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGAGAACAAGTAC--
TTTAGAACAATAAAAT
 A C G T A C T G C T A G C G T A A C T G C G T A C G T A A G T C C T G A C G T A A C T G A C G T C G T A A G T C A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0200.1_Zfp187_2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGAGAACAAGTAC--
NNAGGGACAAGGGCNC
 A C G T A C T G C T A G C G T A A C T G C G T A C G T A A G T C C T G A C G T A A C T G A C G T C G T A A G T C A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

PB0063.1_Sox13_1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGAGAACAAGTAC--
TTAAGAACAATAAATT
 A C G T A C T G C T A G C G T A A C T G C G T A C G T A A G T C C T G A C G T A A C T G A C G T C G T A A G T C A C G T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GGAGAACAAGTAC------
--ACTCCAAGTACTTGGAA
 A C T G C T A G C G T A A C T G C G T A C G T A A G T C C T G A C G T A A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

RXRA::VDR/MA0074.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGAGAACAAGTAC-
GGGTCAACGAGTTCA
 A C G T A C T G C T A G C G T A A C T G C G T A C G T A A G T C C T G A C G T A A C T G A C G T C G T A A G T C A C G T
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

PH0117.1_Nkx3-1/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GGAGAACAAGTAC-------
---TACTAAGTACTTAAATG
 A C T G C T A G C G T A A C T G C G T A C G T A A G T C C T G A C G T A A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GGAGAACAAGTAC
GGGAGGACNG----
 A C G T A C T G C T A G C G T A A C T G C G T A C G T A A G T C C T G A C G T A A C T G A C G T C G T A A G T C
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGAGAACAAGTAC--
GRACAGWMTGTYCTB
 A C T G C T A G C G T A A C T G C G T A C G T A A G T C C T G A C G T A A C T G A C G T C G T A A G T C A C G T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G