Information for 9-ACAGAGCCATGGA (Motif 10)

C G T A A T G C C T G A A C T G C G T A A C T G A G T C A T G C G T C A A C G T A C T G C T A G C T G A
Reverse Opposite:
A G C T A G T C A G T C G T C A A C G T A T C G A C T G G T A C A C G T G T A C A G C T A T C G A C G T
p-value:1e-12
log p-value:-2.824e+01
Information Content per bp:1.837
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.4 +/- 26.8bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGAGCCATGGA-----
RGGCAMTAGGGAGCCATRGAAGGTK
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C C T G A A C T G C G T A A C T G A G T C A T G C G T C A A C G T A C T G C T A G C T G A A C G T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ACAGAGCCATGGA
---CAGCC-----
 C G T A A T G C C T G A A C T G C G T A A C T G A G T C A T G C G T C A A C G T A C T G C T A G C T G A
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ACAGAGCCATGGA
-CGGAGC------
 C G T A A T G C C T G A A C T G C G T A A C T G A G T C A T G C G T C A A C G T A C T G C T A G C T G A
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:ACAGAGCCATGGA-
----GGCCATTAAC
 C G T A A T G C C T G A A C T G C G T A A C T G A G T C A T G C G T C A A C G T A C T G C T A G C T G A A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:ACAGAGCCATGGA
---GAACAATGG-
 C G T A A T G C C T G A A C T G C G T A A C T G A G T C A T G C G T C A A C G T A C T G C T A G C T G A
A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:ACAGAGCCATGGA--
-NGTTGCCATGGCAA
 C G T A A T G C C T G A A C T G C G T A A C T G A G T C A T G C G T C A A C G T A C T G C T A G C T G A A C G T A C G T
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:ACAGAGCCATGGA
---GAACAATGGN
 C G T A A T G C C T G A A C T G C G T A A C T G A G T C A T G C G T C A A C G T A C T G C T A G C T G A
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:ACAGAGCCATGGA-----
--AGAGCCATAAAATTCG
 C G T A A T G C C T G A A C T G C G T A A C T G A G T C A T G C G T C A A C G T A C T G C T A G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Rfx1/MA0509.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:ACAGAGCCATGGA---
--GTTGCCATGGNAAC
 C G T A A T G C C T G A A C T G C G T A A C T G A G T C A T G C G T C A A C G T A C T G C T A G C T G A A C G T A C G T A C G T
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--ACAGAGCCATGGA
SCAGYCADGCATGAC
 A C G T A C G T C G T A A T G C C T G A A C T G C G T A A C T G A G T C A T G C G T C A A C G T A C T G C T A G C T G A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C