Information for 4-TCTTGGCAGA (Motif 7)

C A G T A T G C A C G T A C G T C T A G A T C G A G T C C G T A T A C G C G T A
Reverse Opposite:
A C G T A T G C C G A T A C T G A T G C G A T C G T C A G T C A T A C G G T C A
p-value:1e-12
log p-value:-2.885e+01
Information Content per bp:1.830
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.67%
Number of Background Sequences with motif308.5
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets51.2 +/- 26.5bp
Average Position of motif in Background50.3 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:TCTTGGCAGA
-CTTGGCAA-
 C A G T A T G C A C G T A C G T C T A G A T C G A G T C C G T A T A C G C G T A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TCTTGGCAGA
NNTTGGCANN
 C A G T A T G C A C G T A C G T C T A G A T C G A G T C C G T A T A C G C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TCTTGGCAGA
-NTTGGCANN
 C A G T A T G C A C G T A C G T C T A G A T C G A G T C C G T A T A C G C G T A
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.75
Offset:2
Orientation:forward strand
Alignment:TCTTGGCAGA
--TTGGCA--
 C A G T A T G C A C G T A C G T C T A G A T C G A G T C C G T A T A C G C G T A
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TCTTGGCAGA
GGTTGGCAT-
 C A G T A T G C A C G T A C G T C T A G A T C G A G T C C G T A T A C G C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCTTGGCAGA
TNNGGGCAG-
 C A G T A T G C A C G T A C G T C T A G A T C G A G T C C G T A T A C G C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCTTGGCAGA--
--ATGCCAGACN
 C A G T A T G C A C G T A C G T C T A G A T C G A G T C C G T A T A C G C G T A A C G T A C G T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TCTTGGCAGA
--TTGACAGC
 C A G T A T G C A C G T A C G T C T A G A T C G A G T C C G T A T A C G C G T A
A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCTTGGCAGA
WDNCTGGGCA--
 A C G T A C G T C A G T A T G C A C G T A C G T C T A G A T C G A G T C C G T A T A C G C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCTTGGCAGA-
-VBTGWCAGCB
 C A G T A T G C A C G T A C G T C T A G A T C G A G T C C G T A T A C G C G T A A C G T
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C