Information for 4-AGACAGCAGAGGGAGC (Motif 6)

C T G A A T C G T C G A T G A C C G T A A C T G T G A C C G T A C T A G C T G A C T A G A C T G T A C G G T C A T C A G T A G C
Reverse Opposite:
A T C G A G T C A C G T A T G C A G T C G A T C G A C T G A T C G A C T A C T G G T A C G C A T A C T G A C G T T A G C A G C T
p-value:1e-13
log p-value:-3.120e+01
Information Content per bp:1.645
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.40%
Number of Background Sequences with motif100.3
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets47.0 +/- 26.7bp
Average Position of motif in Background50.2 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGACAGCAGAGGGAGC
-CACAGCAGGGGG---
 C T G A A T C G T C G A T G A C C G T A A C T G T G A C C G T A C T A G C T G A C T A G A C T G T A C G G T C A T C A G T A G C
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGACAGCAGAGGGAGC-----
-GCCASCAGGGGGCGCYVNNG
 C T G A A T C G T C G A T G A C C G T A A C T G T G A C C G T A C T A G C T G A C T A G A C T G T A C G G T C A T C A G T A G C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGACAGCAGAGGGAGC--
TGGCCACCAGGGGGCGCTA
 A C G T C T G A A T C G T C G A T G A C C G T A A C T G T G A C C G T A C T A G C T G A C T A G A C T G T A C G G T C A T C A G T A G C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGACAGCAGAGGGAGC
DCHCAGCAGGRGGCC-
 C T G A A T C G T C G A T G A C C G T A A C T G T G A C C G T A C T A G C T G A C T A G A C T G T A C G G T C A T C A G T A G C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGACAGCAGAGGGAGC---
TGGCCACCAGGTGGCACTNT
 A C G T C T G A A T C G T C G A T G A C C G T A A C T G T G A C C G T A C T A G C T G A C T A G A C T G T A C G G T C A T C A G T A G C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGCAGAGGGAGC
TGAGTCAGCA--------
 A C G T A C G T C T G A A T C G T C G A T G A C C G T A A C T G T G A C C G T A C T A G C T G A C T A G A C T G T A C G G T C A T C A G T A G C
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGACAGCAGAGGGAGC
CCACACAGCAGGAGA---
 A C G T A C G T C T G A A T C G T C G A T G A C C G T A A C T G T G A C C G T A C T A G C T G A C T A G A C T G T A C G G T C A T C A G T A G C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGACAGCAGAGGGAGC
CCACACAGCAGGAGA---
 A C G T A C G T C T G A A T C G T C G A T G A C C G T A A C T G T G A C C G T A C T A G C T G A C T A G A C T G T A C G G T C A T C A G T A G C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGACAGCAGAGGGAGC
-CACAGCGGGGGGTC-
 C T G A A T C G T C G A T G A C C G T A A C T G T G A C C G T A C T A G C T G A C T A G A C T G T A C G G T C A T C A G T A G C
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

Myog/MA0500.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGACAGCAGAGGGAGC
-GACAGCTGCAG----
 C T G A A T C G T C G A T G A C C G T A A C T G T G A C C G T A C T A G C T G A C T A G A C T G T A C G G T C A T C A G T A G C
A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T A C G T A C G T A C G T