Information for 3-TSAGTACCWKGGCCAG (Motif 8)

A C G T A T G C C G T A A T C G G A C T C G T A A T G C A G T C C G A T A C G T C T A G A C T G A G T C A G T C C G T A C T A G
Reverse Opposite:
A G T C A C G T C T A G A C T G A G T C A G T C G T C A C G T A A C T G A T C G A C G T C T G A A T G C A C G T A T C G G T C A
p-value:1e-13
log p-value:-3.049e+01
Information Content per bp:1.791
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.6 +/- 30.0bp
Average Position of motif in Background48.3 +/- 15.0bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TSAGTACCWKGGCCAG----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A T G C C G T A A T C G G A C T C G T A A T G C A G T C C G A T A C G T C T A G A C T G A G T C A G T C C G T A C T A G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TSAGTACCWKGGCCAG----
TCAGCACCATGGACAGCTCC
 A C G T A T G C C G T A A T C G G A C T C G T A A T G C A G T C C G A T A C G T C T A G A C T G A G T C A G T C C G T A C T A G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.53
Offset:10
Orientation:reverse strand
Alignment:TSAGTACCWKGGCCAG
----------TGCCAA
 A C G T A T G C C G T A A T C G G A C T C G T A A T G C A G T C C G A T A C G T C T A G A C T G A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.53
Offset:8
Orientation:forward strand
Alignment:TSAGTACCWKGGCCAG-
--------CGTGCCAAG
 A C G T A T G C C G T A A T C G G A C T C G T A A T G C A G T C C G A T A C G T C T A G A C T G A G T C A G T C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TSAGTACCWKGGCCAG
----WDNCTGGGCA--
 A C G T A T G C C G T A A T C G G A C T C G T A A T G C A G T C C G A T A C G T C T A G A C T G A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.50
Offset:7
Orientation:forward strand
Alignment:TSAGTACCWKGGCCAG-
-------CAAGGHCANV
 A C G T A T G C C G T A A T C G G A C T C G T A A T G C A G T C C G A T A C G T C T A G A C T G A G T C A G T C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.48
Offset:4
Orientation:forward strand
Alignment:TSAGTACCWKGGCCAG---
----TACCATAGCAACGGT
 A C G T A T G C C G T A A T C G G A C T C G T A A T G C A G T C C G A T A C G T C T A G A C T G A G T C A G T C C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.48
Offset:7
Orientation:forward strand
Alignment:TSAGTACCWKGGCCAG---
-------ACTAGCCAATCA
 A C G T A T G C C G T A A T C G G A C T C G T A A T G C A G T C C G A T A C G T C T A G A C T G A G T C A G T C C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.48
Offset:5
Orientation:forward strand
Alignment:TSAGTACCWKGGCCAG
-----AAYTAGGTCA-
 A C G T A T G C C G T A A T C G G A C T C G T A A T G C A G T C C G A T A C G T C T A G A C T G A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:TSAGTACCWKGGCCAG
-------CTAGGCCT-
 A C G T A T G C C G T A A T C G G A C T C G T A A T G C A G T C C G A T A C G T C T A G A C T G A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T