Information for 3-TGCCMAGGYAAAC (Motif 3)

C G A T A C T G G T A C G T A C G T C A C G T A C T A G T C A G A G C T G T C A C T G A C T G A T A G C
Reverse Opposite:
A C T G A G C T A G C T A C G T T C G A A G T C A G T C A C G T A C G T A C T G A C T G G T A C G C T A
p-value:1e-16
log p-value:-3.890e+01
Information Content per bp:1.721
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.69%
Number of Background Sequences with motif252.3
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets44.0 +/- 25.1bp
Average Position of motif in Background50.6 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:TGCCMAGGYAAAC---
TGCCAAAATAAACANN
 C G A T A C T G G T A C G T A C G T C A C G T A C T A G T C A G A G C T G T C A C T G A C T G A T A G C A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGCCMAGGYAAAC
TGCCCAGNHW---
 C G A T A C T G G T A C G T A C G T C A C G T A C T A G T C A G A G C T G T C A C T G A C T G A T A G C
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGCCMAGGYAAAC
GGTGCCAAGT-----
 A C G T A C G T C G A T A C T G G T A C G T A C G T C A C G T A C T A G T C A G A G C T G T C A C T G A C T G A T A G C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

FOXF2/MA0030.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGCCMAGGYAAAC---
--CAAACGTAAACAAT
 C G A T A C T G G T A C G T A C G T C A C G T A C T A G T C A G A G C T G T C A C T G A C T G A T A G C A C G T A C G T A C G T
A C G T A C G T A G T C G T C A G C T A C G T A T A G C C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A C G A T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGCCMAGGYAAAC
CGTGCCAAG------
 A C G T A C G T C G A T A C T G G T A C G T A C G T C A C G T A C T A G T C A G A G C T G T C A C T G A C T G A T A G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TGCCMAGGYAAAC----
--CAAAAGTAAACAAAG
 C G A T A C T G G T A C G T A C G T C A C G T A C T A G T C A G A G C T G T C A C T G A C T G A T A G C A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G

Foxa2/MA0047.2/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGCCMAGGYAAAC-
--NCTAAGTAAACA
 C G A T A C T G G T A C G T A C G T C A C G T A C T A G T C A G A G C T G T C A C T G A C T G A T A G C A C G T
A C G T A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGCCMAGGYAAAC
TGCCAA-------
 C G A T A C T G G T A C G T A C G T C A C G T A C T A G T C A G A G C T G T C A C T G A C T G A T A G C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:9
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TGCCMAGGYAAAC-
-----AAATAAACA
 C G A T A C T G G T A C G T A C G T C A C G T A C T A G T C A G A G C T G T C A C T G A C T G A T A G C A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TGCCMAGGYAAAC-
----AAAGTAAACA
 C G A T A C T G G T A C G T A C G T C A C G T A C T A G T C A G A G C T G T C A C T G A C T G A T A G C A C G T
A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A