Information for 13-CTTATAAATDTTT (Motif 19)

A G T C C G A T A G C T C G T A A C G T C T G A C G T A C G T A C G A T C T G A A C G T C G A T A C G T
Reverse Opposite:
C G T A C G T A C G T A G A C T C G T A A C G T A C G T A G C T C G T A A C G T C T G A C G T A A C T G
p-value:1e-8
log p-value:-1.980e+01
Information Content per bp:1.868
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif11.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.3 +/- 25.9bp
Average Position of motif in Background63.5 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CTTATAAATDTTT
AAAGCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C C G A T A G C T C G T A A C G T C T G A C G T A C G T A C G A T C T G A A C G T C G A T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTTATAAATDTTT
CCYMATAAAA----
 A C G T A G T C C G A T A G C T C G T A A C G T C T G A C G T A C G T A C G A T C T G A A C G T C G A T A C G T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTTATAAATDTTT
NCYAATAAAA----
 A C G T A G T C C G A T A G C T C G T A A C G T C T G A C G T A C G T A C G A T C T G A A C G T C G A T A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CTTATAAATDTTT
AAACCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C C G A T A G C T C G T A A C G T C T G A C G T A C G T A C G A T C T G A A C G T C G A T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTTATAAATDTTT
NGYCATAAAWCH--
 A C G T A G T C C G A T A G C T C G T A A C G T C T G A C G T A C G T A C G A T C T G A A C G T C G A T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTTATAAATDTTT-
TCTTTATATATAAATA
 A C G T A C G T A G T C C G A T A G C T C G T A A C G T C T G A C G T A C G T A C G A T C T G A A C G T C G A T A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CTTATAAATDTTT
NNTNTCATGAATGT--
 A C G T A C G T A C G T A G T C C G A T A G C T C G T A A C G T C T G A C G T A C G T A C G A T C T G A A C G T C G A T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTTATAAATDTTT
CCAATAAAAA---
 A G T C C G A T A G C T C G T A A C G T C T G A C G T A C G T A C G A T C T G A A C G T C G A T A C G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTTATAAATDTTT
CCAATAAAAA---
 A G T C C G A T A G C T C G T A A C G T C T G A C G T A C G T A C G A T C T G A A C G T C G A T A C G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T

PB0198.1_Zfp128_2/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTTATAAATDTTT-
NNTATANATATACN
 A G T C C G A T A G C T C G T A A C G T C T G A C G T A C G T A C G A T C T G A A C G T C G A T A C G T A C G T
A T C G A C T G G C A T C T G A G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G T A C G T C A