Information for 5-GCTCATAAAA (Motif 5)

A C T G G T A C C G A T G A T C C G T A C G A T G T C A C G T A C G T A G T C A
Reverse Opposite:
A C G T A C G T A C G T C A G T G C T A C G A T C T A G C G T A A C T G T G A C
p-value:1e-14
log p-value:-3.372e+01
Information Content per bp:1.831
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif5.36%
Number of Background Sequences with motif537.4
Percentage of Background Sequences with motif1.14%
Average Position of motif in Targets56.7 +/- 28.7bp
Average Position of motif in Background51.3 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---GCTCATAAAA---
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C T G G T A C C G A T G A T C C G T A C G A T G T C A C G T A C G T A G T C A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GCTCATAAAA-
GCTCGTAAAAA
 A C T G G T A C C G A T G A T C C G T A C G A T G T C A C G T A C G T A G T C A A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GCTCATAAAA
NCYAATAAAA
 A C T G G T A C C G A T G A T C C G T A C G A T G T C A C G T A C G T A G T C A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GCTCATAAAA
CCYMATAAAA
 A C T G G T A C C G A T G A T C C G T A C G A T G T C A C G T A C G T A G T C A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---GCTCATAAAA---
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C T G G T A C C G A T G A T C C G T A C G A T G T C A C G T A C G T A G T C A A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.83
Offset:1
Orientation:forward strand
Alignment:GCTCATAAAA-
-CCAATAAAAA
 A C T G G T A C C G A T G A T C C G T A C G A T G T C A C G T A C G T A G T C A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXC10/MA0905.1/Jaspar

Match Rank:7
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCTCATAAAA-
-GTCGTAAAAT
 A C T G G T A C C G A T G A T C C G T A C G A T G T C A C G T A C G T A G T C A A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCTCATAAAA-
-CCAATAAAAA
 A C T G G T A C C G A T G A T C C G T A C G A T G T C A C G T A C G T A G T C A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GCTCATAAAA--
GGTCGTAAAATT
 A C T G G T A C C G A T G A T C C G T A C G A T G T C A C G T A C G T A G T C A A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GCTCATAAAA-
-CCAATAAAAC
 A C T G G T A C C G A T G A T C C G T A C G A T G T C A C G T A C G T A G T C A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C