Information for 2-CAGGGCAGCATTGGCA (Motif 4)

A T G C C G T A C T A G T C A G C A T G T G A C C T G A A C T G A G T C G T C A G A C T A C G T C T A G A C T G A T G C G C T A
Reverse Opposite:
C G A T A T C G A G T C A G T C G T C A C T G A A C G T C T A G G T A C A G C T A C T G G A T C A G T C A G T C A C G T T A C G
p-value:1e-14
log p-value:-3.414e+01
Information Content per bp:1.717
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 24.0bp
Average Position of motif in Background47.3 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.67
Offset:10
Orientation:forward strand
Alignment:CAGGGCAGCATTGGCA
----------TTGGCA
 A T G C C G T A C T A G T C A G C A T G T G A C C T G A A C T G A G T C G T C A G A C T A C G T C T A G A C T G A T G C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.66
Offset:9
Orientation:reverse strand
Alignment:CAGGGCAGCATTGGCA--
---------NTTGGCANN
 A T G C C G T A C T A G T C A G C A T G T G A C C T G A A C T G A G T C G T C A G A C T A C G T C T A G A C T G A T G C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:CAGGGCAGCATTGGCA--
--------NNTTGGCANN
 A T G C C G T A C T A G T C A G C A T G T G A C C T G A A C T G A G T C G T C A G A C T A C G T C T A G A C T G A T G C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:CAGGGCAGCATTGGCA---
-------TGATTGGCTANN
 A T G C C G T A C T A G T C A G C A T G T G A C C T G A A C T G A G T C G T C A G A C T A C G T C T A G A C T G A T G C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.57
Offset:9
Orientation:reverse strand
Alignment:CAGGGCAGCATTGGCA-
---------CTTGGCAA
 A T G C C G T A C T A G T C A G C A T G T G A C C T G A A C T G A G T C G T C A G A C T A C G T C T A G A C T G A T G C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CAGGGCAGCATTGGCA
------CCGATTGGCT
 A T G C C G T A C T A G T C A G C A T G T G A C C T G A A C T G A G T C G T C A G A C T A C G T C T A G A C T G A T G C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAGGGCAGCATTGGCA----
----CAATCACTGGCAGAAT
 A T G C C G T A C T A G T C A G C A T G T G A C C T G A A C T G A G T C G T C A G A C T A C G T C T A G A C T G A T G C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:CAGGGCAGCATTGGCA-
--------GGTTGGCAT
 A T G C C G T A C T A G T C A G C A T G T G A C C T G A A C T G A G T C G T C A G A C T A C G T C T A G A C T G A T G C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGGGCAGCATTGGCA---
NNNGGGHAGCAHRTGCTRCC
 A C G T A T G C C G T A C T A G T C A G C A T G T G A C C T G A A C T G A G T C G T C A G A C T A C G T C T A G A C T G A T G C G C T A A C G T A C G T A C G T
A T G C A G T C G C A T C T A G A C T G C T A G G A C T C G T A C T A G A G T C T G C A G C A T C T G A A C G T T C A G A G T C A C G T C T A G A G T C A G T C

PB0099.1_Zfp691_1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAGGGCAGCATTGGCA-
NNNNTGAGCACTGTNNG
 A T G C C G T A C T A G T C A G C A T G T G A C C T G A A C T G A G T C G T C A G A C T A C G T C T A G A C T G A T G C G C T A A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G