Information for 20-AGCATTTGTCCTT (Motif 30)

C G T A A T C G A G T C C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G C T A G C G T A A G T C C G T A C G T A C G T A C G A T A C T G A T G C A C G T
p-value:1e-8
log p-value:-1.979e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.2 +/- 25.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AGCATTTGTCCTT
--CCTTTGTTTT-
 C G T A A T C G A G T C C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGCATTTGTCCTT-
TGACCTTTTGACCTTT
 A C G T A C G T C G T A A T C G A G T C C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C G T A C G T
G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

Rarg/MA0859.1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGCATTTGTCCTT
TTGACCTTTTGACCTT
 A C G T A C G T A C G T C G T A A T C G A G T C C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C G T
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGCATTTGTCCTT
--CCATTGTTNY-
 C G T A A T C G A G T C C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGCATTTGTCCTT--
NNNTCCTTTGTTCTNNN
 A C G T A C G T C G T A A T C G A G T C C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGCATTTGTCCTT--
TNNTCCTTTGTTCTNNT
 A C G T A C G T C G T A A T C G A G T C C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGCATTTGTCCTT
--YCTTTGTTCC-
 C G T A A T C G A G T C C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:AGCATTTGTCCTT-
----BNTGDCCTTG
 C G T A A T C G A G T C C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGCATTTGTCCTT---
-NCNTTTGTTATTTNN
 C G T A A T C G A G T C C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGCATTTGTCCTT
--CCWTTGTY---
 C G T A A T C G A G T C C G T A A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T