Information for 2-TTGGCAGCAAGCC (Motif 3)

A G C T C A G T A C T G A T C G G T A C G C T A C T A G G T A C C G T A T C G A A C T G A G T C G A T C
Reverse Opposite:
C A T G C T A G T G A C A G C T A C G T C A T G G A T C C G A T A C T G T A G C G T A C G T C A T C G A
p-value:1e-19
log p-value:-4.595e+01
Information Content per bp:1.651
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.56%
Number of Background Sequences with motif253.3
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets53.1 +/- 23.9bp
Average Position of motif in Background50.9 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TTGGCAGCAAGCC-
CTGGCAGNCTGCCA
 A G C T C A G T A C T G A T C G G T A C G C T A C T A G G T A C C G T A T C G A A C T G A G T C G A T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TTGGCAGCAAGCC---
TTGGCANNNTGCCAAG
 A G C T C A G T A C T G A T C G G T A C G C T A C T A G G T A C C G T A T C G A A C T G A G T C G A T C A C G T A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TTGGCAGCAAGCC--
-TGGCACCATGCCAA
 A G C T C A G T A C T G A T C G G T A C G C T A C T A G G T A C C G T A T C G A A C T G A G T C G A T C A C G T A C G T
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCAGCAAGCC
CTTGGCAA------
 A C G T A G C T C A G T A C T G A T C G G T A C G C T A C T A G G T A C C G T A T C G A A C T G A G T C G A T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTGGCAGCAAGCC
TTGGCA-------
 A G C T C A G T A C T G A T C G G T A C G C T A C T A G G T A C C G T A T C G A A C T G A G T C G A T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCAGCAAGCC
NTTGGCANN-----
 A C G T A G C T C A G T A C T G A T C G G T A C G C T A C T A G G T A C C G T A T C G A A C T G A G T C G A T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCAGCAAGCC
NNTTGGCANN-----
 A C G T A C G T A G C T C A G T A C T G A T C G G T A C G C T A C T A G G T A C C G T A T C G A A C T G A G T C G A T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTGGCAGCAAGCC
TTGACAGC-----
 A G C T C A G T A C T G A T C G G T A C G C T A C T A G G T A C C G T A T C G A A C T G A G T C G A T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCAGCAAGCC
GGTTGGCAT------
 A C G T A C G T A G C T C A G T A C T G A T C G G T A C G C T A C T A G G T A C C G T A T C G A A C T G A G T C G A T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TTGGCAGCAAGCC
YTGWCADY-----
 A G C T C A G T A C T G A T C G G T A C G C T A C T A G G T A C C G T A T C G A A C T G A G T C G A T C
G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T A C G T A C G T A C G T