Information for 19-TGGGGDDTCTCTT (Motif 29)

A C G T A C T G A C T G A C T G C T A G C A T G C G T A A C G T A G T C C G A T A T G C A C G T A C G T
Reverse Opposite:
C G T A C G T A A T C G C G T A A C T G C G T A G A C T G A T C A G T C A G T C A G T C G T A C C G T A
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.850
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.8 +/- 24.5bp
Average Position of motif in Background51.2 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0162.1_Six2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGGGGDDTCTCTT--
AATGGGGTATCACGTTT
 A C G T A C G T A C G T A C T G A C T G A C T G C T A G C A T G C G T A A C G T A G T C C G A T A T G C A C G T A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

GLIS1/MA0735.1/Jaspar

Match Rank:2
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------TGGGGDDTCTCTT
GCTTCGTGGGGGGTCT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C T A G C A T G C G T A A C G T A G T C C G A T A T G C A C G T A C G T
T A C G G T A C C G A T G C A T G T A C A C T G G A C T A C T G C T A G A T C G A T C G C A T G A T C G G C A T T G A C C A G T A C G T A C G T A C G T

PB0025.1_Glis2_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGGGGDDTCTCTT
NTNTGGGGGGTCNNNA
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C T A G C A T G C G T A A C G T A G T C C G A T A T G C A C G T A C G T
G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A

PH0165.1_Six6_1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGGGGDDTCTCTT--
AATAGGGTATCAATTAT
 A C G T A C G T A C G T A C T G A C T G A C T G C T A G C A T G C G T A A C G T A G T C C G A T A T G C A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGGGDDTCTCTT
AGGGGATTCCCCT
 A C G T A C T G A C T G A C T G C T A G C A T G C G T A A C G T A G T C C G A T A T G C A C G T A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

Six3/MA0631.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGGGGDDTCTCTT--
GATAGGGTATCACTAAT
 A C G T A C G T A C G T A C T G A C T G A C T G C T A G C A T G C G T A A C G T A G T C C G A T A T G C A C G T A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0163.1_Six3/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGGGGDDTCTCTT--
GATAGGGTATCACTAAT
 A C G T A C G T A C G T A C T G A C T G A C T G C T A G C A T G C G T A A C G T A G T C C G A T A T G C A C G T A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGGGGDDTCTCTT--
AATAGGGTATCATATAT
 A C G T A C G T A C G T A C T G A C T G A C T G C T A G C A T G C G T A A C G T A G T C C G A T A T G C A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

PB0201.1_Zfp281_2/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGGGGDDTCTCTT
NNNATTGGGGGTNTCCT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C T A G C A T G C G T A A C G T A G T C C G A T A T G C A C G T A C G T
A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGGGGDDTCTCTT
NGGGGATTTCCC-
 A C G T A C T G A C T G A C T G C T A G C A T G C G T A A C G T A G T C C G A T A T G C A C G T A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T