Information for 18-CCAACCTAATAAA (Motif 28)

G T A C G T A C G T C A C T G A G A T C A T G C G A C T G C T A C G T A C A G T C T G A C G T A T G C A
Reverse Opposite:
A C G T A C G T A G C T G T C A G C A T C G A T C T G A A T C G C T A G A G C T A C G T C A T G C A T G
p-value:1e-8
log p-value:-2.048e+01
Information Content per bp:1.670
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif52.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets49.7 +/- 23.1bp
Average Position of motif in Background44.9 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CCAACCTAATAAA-----
--AACCCAATAAAATTCG
 G T A C G T A C G T C A C T G A G A T C A T G C G A C T G C T A C G T A C A G T C T G A C G T A T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:CCAACCTAATAAA-
----CCYMATAAAA
 G T A C G T A C G T C A C T G A G A T C A T G C G A C T G C T A C G T A C A G T C T G A C G T A T G C A A C G T
A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.70
Offset:5
Orientation:forward strand
Alignment:CCAACCTAATAAA--
-----CCAATAAAAA
 G T A C G T A C G T C A C T G A G A T C A T G C G A C T G C T A C G T A C A G T C T G A C G T A T G C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.68
Offset:5
Orientation:forward strand
Alignment:CCAACCTAATAAA--
-----CCAATAAAAA
 G T A C G T A C G T C A C T G A G A T C A T G C G A C T G C T A C G T A C A G T C T G A C G T A T G C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CCAACCTAATAAA-
----NCYAATAAAA
 G T A C G T A C G T C A C T G A G A T C A T G C G A C T G C T A C G T A C A G T C T G A C G T A T G C A A C G T
A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.67
Offset:5
Orientation:forward strand
Alignment:CCAACCTAATAAA--
-----CCAATAAAAC
 G T A C G T A C G T C A C T G A G A T C A T G C G A C T G C T A C G T A C A G T C T G A C G T A T G C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCAACCTAATAAA-----
--CTACCAATAAAATTCT
 G T A C G T A C G T C A C T G A G A T C A T G C G A C T G C T A C G T A C A G T C T G A C G T A T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCAACCTAATAAA------
--AATGCAATAAAATTTAT
 G T A C G T A C G T C A C T G A G A T C A T G C G A C T G C T A C G T A C A G T C T G A C G T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCAACCTAATAAA-
NWTAAYCYAATCAWN
 A C G T G T A C G T A C G T C A C T G A G A T C A T G C G A C T G C T A C G T A C A G T C T G A C G T A T G C A A C G T
C A T G G C A T C G A T C G T A C G T A G A T C A G T C A G C T C G T A C G T A A C G T A G T C C G T A C G T A G C A T

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCAACCTAATAAA----
-AAAGCTCGTAAAATTT
 G T A C G T A C G T C A C T G A G A T C A T G C G A C T G C T A C G T A C A G T C T G A C G T A T G C A A C G T A C G T A C G T A C G T
A C G T G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T