Information for 17-TGCTWATSCWCWG (Motif 25)

A C G T A C T G A G T C A C G T C G A T C G T A A C G T A T C G A G T C C G T A A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G C G A T A C T G A T G C G T C A A C G T G C T A C G T A A C T G A G T C C G T A
p-value:1e-9
log p-value:-2.210e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.2 +/- 27.9bp
Average Position of motif in Background60.0 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TGCTWATSCWCWG
-GCTAATCC----
 A C G T A C T G A G T C A C G T C G A T C G T A A C G T A T C G A G T C C G T A A G T C C G T A A C T G
A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGCTWATSCWCWG
-GCTAATCCCC--
 A C G T A C T G A G T C A C G T C G A T C G T A A C G T A T C G A G T C C G T A A G T C C G T A A C T G
A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGCTWATSCWCWG
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G A T C G T A A C G T A T C G A G T C C G T A A G T C C G T A A C T G
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PH0015.1_Crx/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGCTWATSCWCWG--
AGGCTAATCCCCAANG
 A C G T A C G T A C T G A G T C A C G T C G A T C G T A A C G T A T C G A G T C C G T A A G T C C G T A A C T G A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

Crx/MA0467.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TGCTWATSCWCWG
--CTAATCCTCTT
 A C G T A C T G A G T C A C G T C G A T C G T A A C G T A T C G A G T C C G T A A G T C C G T A A C T G
A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGCTWATSCWCWG
-CCTAATCCGC--
 A C G T A C T G A G T C A C G T C G A T C G T A A C G T A T C G A G T C C G T A A G T C C G T A A C T G
A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TGCTWATSCWCWG-
--SSAATCCACANN
 A C G T A C T G A G T C A C G T C G A T C G T A A C G T A T C G A G T C C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCTWATSCWCWG
TATGCWAATBAV---
 A C G T A C G T A C G T A C T G A G T C A C G T C G A T C G T A A C G T A T C G A G T C C G T A A G T C C G T A A C T G
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCTWATSCWCWG
TATGCAAAT------
 A C G T A C G T A C G T A C T G A G T C A C G T C G A T C G T A A C G T A T C G A G T C C G T A A G T C C G T A A C T G
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGCTWATSCWCWG
-NYTAATCCYB--
 A C G T A C T G A G T C A C G T C G A T C G T A A C G T A T C G A G T C C G T A A G T C C G T A A C T G
A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T