Information for 18-TCTCAATTAAATGTYC (Motif 22)

C G A T A T G C C A G T G A T C G T C A G C T A A C G T C G A T G C T A C T G A C G T A C A G T C T A G A C G T G A C T A G T C
Reverse Opposite:
C T A G C T G A C G T A G A T C G T C A C G A T A G C T C G A T C G T A C G T A C G A T C A G T C T A G G T C A T A C G G C T A
p-value:1e-10
log p-value:-2.314e+01
Information Content per bp:1.714
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.9 +/- 22.1bp
Average Position of motif in Background55.2 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TCTCAATTAAATGTYC
AATGCAATAAAATTTAT
 A C G T C G A T A T G C C A G T G A T C G T C A G C T A A C G T C G A T G C T A C T G A C G T A C A G T C T A G A C G T G A C T A G T C
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCTCAATTAAATGTYC
CTACCAATAAAATTCT-
 A C G T C G A T A T G C C A G T G A T C G T C A G C T A A C G T C G A T G C T A C T G A C G T A C A G T C T A G A C G T G A C T A G T C
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCTCAATTAAATGTYC
-NGCAATTAAA-----
 C G A T A T G C C A G T G A T C G T C A G C T A A C G T C G A T G C T A C T G A C G T A C A G T C T A G A C G T G A C T A G T C
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCTCAATTAAATGTYC
GGGTTTAATTAAAATTC-
 A C G T A C G T C G A T A T G C C A G T G A T C G T C A G C T A A C G T C G A T G C T A C T G A C G T A C A G T C T A G A C G T G A C T A G T C
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCTCAATTAAATGTYC
AACCCAATAAAATTCG-
 A C G T C G A T A T G C C A G T G A T C G T C A G C T A A C G T C G A T G C T A C T G A C G T A C A G T C T A G A C G T G A C T A G T C
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T

PH0095.1_Lhx5/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCTCAATTAAATGTYC
CGAATTAATTAAATACT-
 A C G T A C G T C G A T A T G C C A G T G A T C G T C A G C T A A C G T C G A T G C T A C T G A C G T A C A G T C T A G A C G T G A C T A G T C
T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCTCAATTAAATGTYC
--GCAATAAAAA----
 C G A T A T G C C A G T G A T C G T C A G C T A A C G T C G A T G C T A C T G A C G T A C A G T C T A G A C G T G A C T A G T C
A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T

PH0101.1_Lmx1b/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCTCAATTAAATGTYC
NNAATTAATTAAAAANN-
 A C G T A C G T C G A T A T G C C A G T G A T C G T C A G C T A A C G T C G A T G C T A C T G A C G T A C A G T C T A G A C G T G A C T A G T C
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T A C G T

PH0093.1_Lhx3/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCTCAATTAAATGTYC
GAAATTAATTAAATAAT-
 A C G T A C G T C G A T A T G C C A G T G A T C G T C A G C T A A C G T C G A T G C T A C T G A C G T A C A G T C T A G A C G T G A C T A G T C
T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TCTCAATTAAATGTYC
-NCYAATAAAA-----
 C G A T A T G C C A G T G A T C G T C A G C T A A C G T C G A T G C T A C T G A C G T A C A G T C T A G A C G T G A C T A G T C
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T