Information for 9-GGCAGCCVGBCCTAGC (Motif 19)

A T C G A C T G A T G C G T C A A C T G A G T C A G T C T A C G A T C G A G T C A G T C A T G C A G C T C T G A A C T G A G T C
Reverse Opposite:
A C T G A G T C A G C T C T G A T A C G A C T G T A C G A T G C A G T C A C T G A C T G A G T C A C G T A T C G A G T C A T G C
p-value:1e-7
log p-value:-1.615e+01
Information Content per bp:1.841
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.2 +/- 26.9bp
Average Position of motif in Background54.5 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGCAGCCVGBCCTAGC----
GGYAGCAYDTGCTDCCCNNN
 A T C G A C T G A T G C G T C A A C T G A G T C A G T C T A C G A T C G A G T C A G T C A T G C A G C T C T G A A C T G A G T C A C G T A C G T A C G T A C G T
A C T G C T A G G A T C C G T A C T A G A G T C T G C A G A C T C G T A A C G T T C A G A G T C A C G T C T G A A G T C A G T C G A T C C G T A T C A G T A C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGCAGCCVGBCCTAGC
CTGGCAGNCTGCCA----
 A C G T A C G T A T C G A C T G A T G C G T C A A C T G A G T C A G T C T A C G A T C G A G T C A G T C A T G C A G C T C T G A A C T G A G T C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGCAGCCVGBCCTAGC
-SCAGYCADGCATGAC
 A T C G A C T G A T G C G T C A A C T G A G T C A G T C T A C G A T C G A G T C A G T C A T G C A G C T C T G A A C T G A G T C
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5/MA0014.2/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGCAGCCVGBCCTAGC
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A T C G A C T G A T G C G T C A A C T G A G T C A G T C T A C G A T C G A G T C A G T C A T G C A G C T C T G A A C T G A G T C
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GGCAGCCVGBCCTAGC-
-GCAGCCAAGCGTGACN
 A T C G A C T G A T G C G T C A A C T G A G T C A G T C T A C G A T C G A G T C A G T C A T G C A G C T C T G A A C T G A G T C A C G T
A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGCAGCCVGBCCTAGC
--CAGCC---------
 A T C G A C T G A T G C G T C A A C T G A G T C A G T C T A C G A T C G A G T C A G T C A T G C A G C T C T G A A C T G A G T C
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGCAGCCVGBCCTAGC
CGGAGC----------
 A T C G A C T G A T G C G T C A A C T G A G T C A G T C T A C G A T C G A G T C A G T C A T G C A G C T C T G A A C T G A G T C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GGCAGCCVGBCCTAGC-----
-NAAACCGGTTNNAACCGGTT
 A T C G A C T G A T G C G T C A A C T G A G T C A G T C T A C G A T C G A G T C A G T C A T G C A G C T C T G A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C G A C T G A C T G A A T G C G A T C C T A G T A C G G A C T G A C T G A T C T C G A C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.49
Offset:7
Orientation:forward strand
Alignment:GGCAGCCVGBCCTAGC
-------AGGCCTAG-
 A T C G A C T G A T G C G T C A A C T G A G T C A G T C T A C G A T C G A G T C A G T C A T G C A G C T C T G A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T

ESR2/MA0258.2/Jaspar

Match Rank:10
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--GGCAGCCVGBCCTAGC
AGGTCACCCTGACCT---
 A C G T A C G T A T C G A C T G A T G C G T C A A C T G A G T C A G T C T A C G A T C G A G T C A G T C A T G C A G C T C T G A A C T G A G T C
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T A C G T A C G T A C G T