Information for 11-CGCCAAGCTT (Motif 16)

A T G C A T C G A G T C G T A C T C G A C T G A A C T G A G T C A C G T A C G T
Reverse Opposite:
T G C A C G T A A C T G A G T C A G C T A G C T A C T G A C T G A T G C T A C G
p-value:1e-8
log p-value:-2.024e+01
Information Content per bp:1.859
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif40.2
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets44.2 +/- 23.7bp
Average Position of motif in Background44.1 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.82
Offset:3
Orientation:forward strand
Alignment:CGCCAAGCTT
---CAAGCTT
 A T G C A T C G A G T C G T A C T C G A C T G A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGCCAAGCTT
CGTGCCAAG---
 A C G T A C G T A T G C A T C G A G T C G T A C T C G A C T G A A C T G A G T C A C G T A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGCCAAGCTT
TGCCAA----
 A T G C A T C G A G T C G T A C T C G A C T G A A C T G A G T C A C G T A C G T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAAGCTT
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A T C G A G T C G T A C T C G A C T G A A C T G A G T C A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CGCCAAGCTT
GGTGCCAAGT--
 A C G T A C G T A T G C A T C G A G T C G T A C T C G A C T G A A C T G A G T C A C G T A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAAGCTT
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A T C G A G T C G T A C T C G A C T G A A C T G A G T C A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

PB0113.1_E2F3_2/Jaspar

Match Rank:7
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAAGCTT
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A T C G A G T C G T A C T C G A C T G A A C T G A G T C A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CGCCAAGCTT
-----NGCTN
 A T G C A T C G A G T C G T A C T C G A C T G A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGCCAAGCTT
TTGCCAAG---
 A C G T A T G C A T C G A G T C G T A C T C G A C T G A A C T G A G T C A C G T A C G T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CGCCAAGCTT--
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A T G C A T C G A G T C G T A C T C G A C T G A A C T G A G T C A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C