Information for 3-WCCAGAGAAMCGC (Motif 6)

G C T A A T G C G T A C C G T A A C T G C G T A A C T G C G T A C G T A G T A C A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C C T A G A C T G A C G T A C G T A G T C A C G T A G T C A C G T A C T G A T C G C G A T
p-value:1e-12
log p-value:-2.969e+01
Information Content per bp:1.910
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.7 +/- 23.5bp
Average Position of motif in Background60.8 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Stat6/MA0520.1/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----WCCAGAGAAMCGC
CATTTCCTGAGAAAT--
 A C G T A C G T A C G T A C G T G C T A A T G C G T A C C G T A A C T G C G T A A C T G C G T A C G T A G T A C A G T C A C T G A G T C
A T G C C G T A A G C T A C G T C G A T G T A C G A T C C G A T T A C G C T G A C A T G C G T A C T G A T G C A G A C T A C G T A C G T

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-WCCAGAGAAMCGC
TTCCKNAGAA----
 A C G T G C T A A T G C G T A C C G T A A C T G C G T A A C T G C G T A C G T A G T A C A G T C A C T G A G T C
G A C T C A G T G A T C G A T C A C G T G A T C C T G A T A C G C G T A G T C A A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----WCCAGAGAAMCGC
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T G C T A A T G C G T A C C G T A A C T G C G T A A C T G C G T A C G T A G T A C A G T C A C T G A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--WCCAGAGAAMCGC
ATGCCAGACN-----
 A C G T A C G T G C T A A T G C G T A C C G T A A C T G C G T A A C T G C G T A C G T A G T A C A G T C A C T G A G T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-WCCAGAGAAMCGC
TTCTNNAGAANT--
 A C G T G C T A A T G C G T A C C G T A A C T G C G T A A C T G C G T A C G T A G T A C A G T C A C T G A G T C
A C G T A C G T A G T C G A C T A G C T C T G A C T G A C T A G C G T A C G T A T C G A G A C T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:WCCAGAGAAMCGC
-CCAGACRSVB--
 G C T A A T G C G T A C C G T A A C T G C G T A A C T G C G T A C G T A G T A C A G T C A C T G A G T C
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--WCCAGAGAAMCGC
GNNACCGAGAATNNN
 A C G T A C G T G C T A A T G C G T A C C G T A A C T G C G T A A C T G C G T A C G T A G T A C A G T C A C T G A G T C
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--WCCAGAGAAMCGC
AAACCACAGAN----
 A C G T A C G T G C T A A T G C G T A C C G T A A C T G C G T A A C T G C G T A C G T A G T A C A G T C A C T G A G T C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-WCCAGAGAAMCGC-
TACCATAGCAACGGT
 A C G T G C T A A T G C G T A C C G T A A C T G C G T A A C T G C G T A C G T A G T A C A G T C A C T G A G T C A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:WCCAGAGAAMCGC
-CCAGACAG----
 G C T A A T G C G T A C C G T A A C T G C G T A A C T G C G T A C G T A G T A C A G T C A C T G A G T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T