Information for 8-CAGACKCGGCCGCCAC (Motif 11)

A G T C C G T A A T C G C G T A A G T C A C G T A T G C A T C G A C T G A G T C A G T C A C T G A T G C A G T C C T G A A T G C
Reverse Opposite:
A T C G A G C T A C T G A T C G A G T C A C T G A C T G A G T C A T G C A T C G G T A C A C T G A C G T A T G C A C G T A C T G
p-value:1e-10
log p-value:-2.404e+01
Information Content per bp:1.863
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.8 +/- 12.5bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGACKCGGCCGCCAC
CCAGACRSVB-------
 A C G T A G T C C G T A A T C G C G T A A G T C A C G T A T G C A T C G A C T G A G T C A G T C A C T G A T G C A G T C C T G A A T G C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGACKCGGCCGCCAC
CCAGACAG---------
 A C G T A G T C C G T A A T C G C G T A A G T C A C G T A T G C A T C G A C T G A G T C A G T C A C T G A T G C A G T C C T G A A T G C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:3
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CAGACKCGGCCGCCAC
AGCAACAGCCGCACC------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G C G T A A G T C A C G T A T G C A T C G A C T G A G T C A G T C A C T G A T G C A G T C C T G A A T G C
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CAGACKCGGCCGCCAC
BCAGACWA---------
 A C G T A G T C C G T A A T C G C G T A A G T C A C G T A T G C A T C G A C T G A G T C A G T C A C T G A T G C A G T C C T G A A T G C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:5
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CAGACKCGGCCGCCAC-
---CCCCCGCCCCCGCC
 A G T C C G T A A T C G C G T A A G T C A C G T A T G C A T C G A C T G A G T C A G T C A C T G A T G C A G T C C T G A A T G C A C G T
A C G T A C G T A C G T A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CAGACKCGGCCGCCAC----
---TACGCCCCGCCACTCTG
 A G T C C G T A A T C G C G T A A G T C A C G T A T G C A T C G A C T G A G T C A G T C A C T G A T G C A G T C C T G A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:CAGACKCGGCCGCCAC
----CTAGGCCT----
 A G T C C G T A A T C G C G T A A G T C A C G T A T G C A T C G A C T G A G T C A G T C A C T G A T G C A G T C C T G A A T G C
A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:CAGACKCGGCCGCCAC----
--------GCCGCCATCTTG
 A G T C C G T A A T C G C G T A A G T C A C G T A T G C A T C G A C T G A G T C A G T C A C T G A T G C A G T C C T G A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------CAGACKCGGCCGCCAC
CAAATCCAGACATCACA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G C G T A A G T C A C G T A T G C A T C G A C T G A G T C A G T C A C T G A T G C A G T C C T G A A T G C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.49
Offset:7
Orientation:forward strand
Alignment:CAGACKCGGCCGCCAC--
-------GTCCGCCATTA
 A G T C C G T A A T C G C G T A A G T C A C G T A T G C A T C G A C T G A G T C A G T C A C T G A T G C A G T C C T G A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A