Information for 8-CACAAGGTGGCAG (Motif 9)

A G T C G C T A A T G C G T C A T C G A A C T G T C A G A C G T A C T G A T C G A T G C G T C A A C T G
Reverse Opposite:
A G T C A C G T A T C G A T G C A G T C G T C A A G T C A G T C A G C T C A G T A T C G C A G T T A C G
p-value:1e-11
log p-value:-2.544e+01
Information Content per bp:1.778
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.58%
Number of Background Sequences with motif61.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets40.6 +/- 29.1bp
Average Position of motif in Background59.5 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----CACAAGGTGGCAG---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A G T C G C T A A T G C G T C A T C G A A C T G T C A G A C G T A C T G A T C G A T G C G T C A A C T G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----CACAAGGTGGCAG--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A G T C G C T A A T G C G T C A T C G A A C T G T C A G A C G T A C T G A T C G A T G C G T C A A C T G A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CACAAGGTGGCAG-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A G T C G C T A A T G C G T C A T C G A A C T G T C A G A C G T A C T G A T C G A T G C G T C A A C T G A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CACAAGGTGGCAG
----AGGTGTCA-
 A G T C G C T A A T G C G T C A T C G A A C T G T C A G A C G T A C T G A T C G A T G C G T C A A C T G
A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CACAAGGTGGCAG----
----AGGTGNCAGACAG
 A G T C G C T A A T G C G T C A T C G A A C T G T C A G A C G T A C T G A T C G A T G C G T C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CACAAGGTGGCAG-
--CAAGATGGCGGC
 A G T C G C T A A T G C G T C A T C G A A C T G T C A G A C G T A C T G A T C G A T G C G T C A A C T G A C G T
A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CACAAGGTGGCAG
----GGTTGGCAT
 A G T C G C T A A T G C G T C A T C G A A C T G T C A G A C G T A C T G A T C G A T G C G T C A A C T G
A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CACAAGGTGGCAG---
----AGGTGHCAGACA
 A G T C G C T A A T G C G T C A T C G A A C T G T C A G A C G T A C T G A T C G A T G C G T C A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CACAAGGTGGCAG-
--CAAGATGGCGGC
 A G T C G C T A A T G C G T C A T C G A A C T G T C A G A C G T A C T G A T C G A T G C G T C A A C T G A C G T
A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CACAAGGTGGCAG--
-----VBTGWCAGCB
 A G T C G C T A A T G C G T C A T C G A A C T G T C A G A C G T A C T G A T C G A T G C G T C A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C