Information for 11-GCATTAAAAC (Motif 18)

A T C G A G T C T G C A A G C T C G A T C G T A C G T A T C G A C T G A A T G C
Reverse Opposite:
A T C G G A C T A C G T A C G T G C A T C G T A C T G A A C G T A C T G A T G C
p-value:1e-9
log p-value:-2.189e+01
Information Content per bp:1.772
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif34.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets67.1 +/- 23.9bp
Average Position of motif in Background44.3 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GCATTAAAAC
--ATTAAA--
 A T C G A G T C T G C A A G C T C G A T C G T A C G T A T C G A C T G A A T G C
A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCATTAAAAC
NGCAATTAAA-
 A C G T A T C G A G T C T G C A A G C T C G A T C G T A C G T A T C G A C T G A A T G C
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCATTAAAAC
AAGCCATAAAA-
 A C G T A C G T A T C G A G T C T G C A A G C T C G A T C G T A C G T A T C G A C T G A A T G C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCATTAAAAC-
NGYCATAAAWCH
 A C G T A T C G A G T C T G C A A G C T C G A T C G T A C G T A T C G A C T G A A T G C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCATTAAAAC
GTCATAAAAN
 A T C G A G T C T G C A A G C T C G A T C G T A C G T A T C G A C T G A A T G C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCATTAAAAC---
TATCATTAGAACGCT
 A C G T A C G T A T C G A G T C T G C A A G C T C G A T C G T A C G T A T C G A C T G A A T G C A C G T A C G T A C G T
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCATTAAAAC
GCAATAAAA-
 A T C G A G T C T G C A A G C T C G A T C G T A C G T A T C G A C T G A A T G C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCATTAAAAC
CCAATAAAAA
 A T C G A G T C T G C A A G C T C G A T C G T A C G T A T C G A C T G A A T G C
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCATTAAAAC
CCAATAAAAC
 A T C G A G T C T G C A A G C T C G A T C G T A C G T A T C G A C T G A A T G C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCATTAAAAC
GGTAATAAAAA
 A C G T A T C G A G T C T G C A A G C T C G A T C G T A C G T A T C G A C T G A A T G C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A