Information for 3-AGAAATAGGAATAAAA (Motif 7)

C G T A A T C G C G T A C G T A C G T A G A C T C G T A C T A G C T A G C G T A C G T A A C G T G T C A C T G A G C T A C G T A
Reverse Opposite:
C G A T C A G T A G C T A C G T C G T A A C G T A C G T A G T C G A T C C G A T C G T A C G A T A C G T C G A T A T G C A C G T
p-value:1e-10
log p-value:-2.444e+01
Information Content per bp:1.780
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif17.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets39.2 +/- 21.6bp
Average Position of motif in Background37.9 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0148.1_Mtf1_2/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGAAATAGGAATAAAA
--AAATAAGAAAAAAC
 C G T A A T C G C G T A C G T A C G T A G A C T C G T A C T A G C T A G C G T A C G T A A C G T G T C A C T G A G C T A C G T A
A C G T A C G T G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGAAATAGGAATAAAA
AACAAACAACAAGAG--
 A C G T C G T A A T C G C G T A C G T A C G T A G A C T C G T A C T A G C T A G C G T A C G T A A C G T G T C A C T G A G C T A C G T A
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGAAATAGGAATAAAA--
GAAGTANCACGAATNMRAGT
 A C G T A C G T C G T A A T C G C G T A C G T A C G T A G A C T C G T A C T A G C T A G C G T A C G T A A C G T G T C A C T G A G C T A C G T A A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGAAATAGGAATAAAA----
----CTACCAATAAAATTCT
 C G T A A T C G C G T A C G T A C G T A G A C T C G T A C T A G C T A G C G T A C G T A A C G T G T C A C T G A G C T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AGAAATAGGAATAAAA-
------GGTAATAAAAA
 C G T A A T C G C G T A C G T A C G T A G A C T C G T A C T A G C T A G C G T A C G T A A C G T G T C A C T G A G C T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.57
Offset:7
Orientation:forward strand
Alignment:AGAAATAGGAATAAAA-
-------GTCATAAAAN
 C G T A A T C G C G T A C G T A C G T A G A C T C G T A C T A G C T A G C G T A C G T A A C G T G T C A C T G A G C T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.56
Offset:7
Orientation:forward strand
Alignment:AGAAATAGGAATAAAA
-------GCAATAAAA
 C G T A A T C G C G T A C G T A C G T A G A C T C G T A C T A G C T A G C G T A C G T A A C G T G T C A C T G A G C T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

MEF2C/MA0497.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGAAATAGGAATAAAA
-ATGCTAAAAATAGAA
 C G T A A T C G C G T A C G T A C G T A G A C T C G T A C T A G C T A G C G T A C G T A A C G T G T C A C T G A G C T A C G T A
A C G T C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

ONECUT3/MA0757.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGAAATAGGAATAAAA
-AAAAAATCAATAAT-
 C G T A A T C G C G T A C G T A C G T A G A C T C G T A C T A G C T A G C G T A C G T A A C G T G T C A C T G A G C T A C G T A
A C G T T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:10
Score:0.56
Offset:7
Orientation:forward strand
Alignment:AGAAATAGGAATAAAA-
-------GCAATAAAAA
 C G T A A T C G C G T A C G T A C G T A G A C T C G T A C T A G C T A G C G T A C G T A A C G T G T C A C T G A G C T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A