Information for 20-TAGTCCATGAACT (Motif 29)

A C G T C G T A A C T G A C G T A G T C A G T C G T C A A C G T A C T G C G T A C T G A A G T C A C G T
Reverse Opposite:
C G T A A C T G A G C T C G A T A G T C C G T A A C G T A C T G A C T G C G T A A G T C A C G T C G T A
p-value:1e-4
log p-value:-9.774e+00
Information Content per bp:1.941
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.5 +/- 10.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TAGTCCATGAACT
-TGACCTTGACCT
 A C G T C G T A A C T G A C G T A G T C A G T C G T C A A C G T A C T G C G T A C T G A A G T C A C G T
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TAGTCCATGAACT
-TGACCTTGACCT
 A C G T C G T A A C T G A C G T A G T C A G T C G T C A A C G T A C T G C G T A C T G A A G T C A C G T
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TAGTCCATGAACT-
GCTGACCTTGAACTN
 A C G T A C G T C G T A A C T G A C G T A G T C A G T C G T C A A C G T A C T G C G T A C T G A A G T C A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

PH0083.1_Irx3_1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TAGTCCATGAACT--
ANTATTACATGTANNNN
 A C G T A C G T A C G T C G T A A C T G A C G T A G T C A G T C G T C A A C G T A C T G C G T A C T G A A G T C A C G T A C G T A C G T
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T

Vdr/MA0693.1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TAGTCCATGAACT-
TGAACTCNATGAACTC
 A C G T A C G T A C G T C G T A A C T G A C G T A G T C A G T C G T C A A C G T A C T G C G T A C T G A A G T C A C G T A C G T
G A C T T C A G T G C A T G C A G A T C A G C T A G T C C T G A C T G A G A C T T C A G T G C A T G C A G T A C A G C T A G T C

PB0096.1_Zfp187_1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TAGTCCATGAACT
TTATTAGTACATAN---
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G T C A G T C G T C A A C G T A C T G C G T A C T G A A G T C A C G T
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A A C G T A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TAGTCCATGAACT-
TAATTCAATGAAGTG
 A C G T A C G T C G T A A C T G A C G T A G T C A G T C G T C A A C G T A C T G C G T A C T G A A G T C A C G T A C G T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

PH0087.1_Irx6/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TAGTCCATGAACT--
ANTTNTACATGTANTTN
 A C G T A C G T A C G T C G T A A C T G A C G T A G T C A G T C G T C A A C G T A C T G C G T A C T G A A G T C A C G T A C G T A C G T
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TAGTCCATGAACT
--GGCCATTAAC-
 A C G T C G T A A C T G A C G T A G T C A G T C G T C A A C G T A C T G C G T A C T G A A G T C A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TAGTCCATGAACT--
NNTATTACATGTANNNT
 A C G T A C G T A C G T C G T A A C T G A C G T A G T C A G T C G T C A A C G T A C T G C G T A C T G A A G T C A C G T A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T