Information for 19-CACACAVTAAGCA (Motif 28)

A G T C C G T A A G T C C G T A A G T C C G T A T A G C A C G T G T C A G T C A A T C G A G T C C G T A
Reverse Opposite:
A C G T A C T G A T G C A C G T A C G T C G T A A C T G A C G T C T A G A C G T A C T G A C G T A C T G
p-value:1e-4
log p-value:-9.774e+00
Information Content per bp:1.865
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.3 +/- 27.0bp
Average Position of motif in Background55.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CACACAVTAAGCA
AGCGGCACACACGCAA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A T A G C A C G T G T C A G T C A A T C G A G T C C G T A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CACACAVTAAGCA
CGAAGCACACAAAATA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A T A G C A C G T G T C A G T C A A T C G A G T C C G T A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T

PB0177.1_Sox7_2/Jaspar

Match Rank:3
Score:0.63
Offset:-8
Orientation:reverse strand
Alignment:--------CACACAVTAAGCA-
NNCNNNCNCANACAATTAGNAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A T A G C A C G T G T C A G T C A A T C G A G T C C G T A A C G T
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C

PB0168.1_Sox14_2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CACACAVTAAGCA
CTCACACAATGGCGC
 A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A T A G C A C G T G T C A G T C A A T C G A G T C C G T A
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

MAFK/MA0496.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CACACAVTAAGCA----
--CTGAGTCAGCAATTT
 A G T C C G T A A G T C C G T A A G T C C G T A T A G C A C G T G T C A G T C A A T C G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CACACAVTAAGCA
--GACAATGNN--
 A G T C C G T A A G T C C G T A A G T C C G T A T A G C A C G T G T C A G T C A A T C G A G T C C G T A
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CACACAVTAAGCA
CACGCA-------
 A G T C C G T A A G T C C G T A A G T C C G T A T A G C A C G T G T C A G T C A A T C G A G T C C G T A
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CACACAVTAAGCA
ATTTGCATACAATGG---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A T A G C A C G T G T C A G T C A A T C G A G T C C G T A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

MAFF/MA0495.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CACACAVTAAGCA------
-GCTGAGTCAGCAATTTTT
 A G T C C G T A A G T C C G T A A G T C C G T A T A G C A C G T G T C A G T C A A T C G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T C G G T A C G C A T C T A G C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A G C A T G C A T G C A T G A C T G C A T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CACACAVTAAGCA
TBGCACGCAA------
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A T A G C A C G T G T C A G T C A A T C G A G T C C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T