Information for 7-GGAAGAACTT (Motif 35)

A C T G A T C G G T C A C G T A A T C G C G T A C G T A A G T C A G C T A C G T
Reverse Opposite:
C G T A C T G A A C T G A C G T A C G T A T G C A C G T A C G T A T G C A G T C
p-value:1e-7
log p-value:-1.635e+01
Information Content per bp:1.914
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif50.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets43.6 +/- 23.9bp
Average Position of motif in Background49.5 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GGAAGAACTT--
--AAGCACTTAA
 A C T G A T C G G T C A C G T A A T C G C G T A C G T A A G T C A G C T A C G T A C G T A C G T
A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PH0117.1_Nkx3-1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGAAGAACTT-----
TACTAAGTACTTAAATG
 A C G T A C G T A C T G A T C G G T C A C G T A A T C G C G T A C G T A A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0112.1_Nkx2-3/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GGAAGAACTT----
CNTTAAGTACTTAANG
 A C G T A C G T A C T G A T C G G T C A C G T A A T C G C G T A C G T A A G T C A G C T A C G T A C G T A C G T A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

POL005.1_DPE/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGAAGAACTT-
--NACATCTTN
 A C T G A T C G G T C A C G T A A T C G C G T A C G T A A G T C A G C T A C G T A C G T
A C G T A C G T C T G A C T G A A T G C C T G A C G A T T A G C G A C T C A G T A G T C

NFATC2/MA0152.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGAAGAACTT
TGGAAAA----
 A C G T A C T G A T C G G T C A C G T A A T C G C G T A C G T A A G T C A G C T A C G T
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T

MF0001.1_ETS_class/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGAAGAACTT
ACCGGAAG-----
 A C G T A C G T A C G T A C T G A T C G G T C A C G T A A T C G C G T A C G T A A G T C A G C T A C G T
C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T A C G T A C G T A C G T A C G T

ELF5/MA0136.2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGAAGAACTT
ACCCGGAAGTA---
 A C G T A C G T A C G T A C G T A C T G A T C G G T C A C G T A A T C G C G T A C G T A A G T C A G C T A C G T
C G T A T G A C T A G C T G A C C A T G C A T G G T C A G C T A T C A G G A C T C T G A A C G T A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGAAGAACTT----
ACTCCAAGTACTTGGAA
 A C G T A C G T A C G T A C T G A T C G G T C A C G T A A T C G C G T A C G T A A G T C A G C T A C G T A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGAAGAACTT
NGAAGC----
 A C T G A T C G G T C A C G T A A T C G C G T A C G T A A G T C A G C T A C G T
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGAAGAACTT-----
TTTTAAGTACTTAAATT
 A C G T A C G T A C T G A T C G G T C A C G T A A T C G C G T A C G T A A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T