Information for 4-CTTTTTGGCA (Motif 28)

A T G C G A C T A G C T C A G T G C A T A G C T A T C G T A C G T A G C T C G A
Reverse Opposite:
A G C T A T C G A T G C T A G C T C G A C G T A G T C A T C G A C T G A T A C G
p-value:1e-8
log p-value:-1.901e+01
Information Content per bp:1.652
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif10.24%
Number of Background Sequences with motif2366.5
Percentage of Background Sequences with motif4.90%
Average Position of motif in Targets53.2 +/- 27.6bp
Average Position of motif in Background50.1 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:CTTTTTGGCA--
--NNTTGGCANN
 A T G C G A C T A G C T C A G T G C A T A G C T A T C G T A C G T A G C T C G A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:CTTTTTGGCA--
---NTTGGCANN
 A T G C G A C T A G C T C A G T G C A T A G C T A T C G T A C G T A G C T C G A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.73
Offset:4
Orientation:forward strand
Alignment:CTTTTTGGCA
----TTGGCA
 A T G C G A C T A G C T C A G T G C A T A G C T A T C G T A C G T A G C T C G A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CTTTTTGGCA-
---CTTGGCAA
 A T G C G A C T A G C T C A G T G C A T A G C T A T C G T A C G T A G C T C G A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTTTTTGGCA-
TTTTATGGCTN
 A T G C G A C T A G C T C A G T G C A T A G C T A T C G T A C G T A G C T C G A A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTGGCA----
ANATTTTTGCAANTN
 A C G T A T G C G A C T A G C T C A G T G C A T A G C T A T C G T A C G T A G C T C G A A C G T A C G T A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTTTTTGGCA-
--GGTTGGCAT
 A T G C G A C T A G C T C A G T G C A T A G C T A T C G T A C G T A G C T C G A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTGGCA
NTTTTATGAC-
 A C G T A T G C G A C T A G C T C A G T G C A T A G C T A T C G T A C G T A G C T C G A
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTTTTTGGCA
TTTTATTGC-
 A T G C G A C T A G C T C A G T G C A T A G C T A T C G T A C G T A G C T C G A
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTGGCA-----
NNNNTTGGGCACNNCN
 A C G T A T G C G A C T A G C T C A G T G C A T A G C T A T C G T A C G T A G C T C G A A C G T A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C