Information for 2-AGAGTTATTYTCTTGG (Motif 2)

C T G A C T A G C G T A C T A G C G A T A G C T C G T A G A C T C G A T A G T C A C G T A G T C G A C T C G A T A C T G C A T G
Reverse Opposite:
G T A C G T A C C G T A C G T A C T A G C G T A C T A G C G T A C G T A A C G T C T G A C G T A A G T C A C G T G A T C A G C T
p-value:1e-13
log p-value:-3.124e+01
Information Content per bp:1.729
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.0 +/- 22.1bp
Average Position of motif in Background70.8 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGAGTTATTYTCTTGG
--AATTATT-------
 C T G A C T A G C G T A C T A G C G A T A G C T C G T A G A C T C G A T A G T C A C G T A G T C G A C T C G A T A C T G C A T G
A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:2
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AGAGTTATTYTCTTGG
GATAATTAATCCCTCTT
 A C G T C T G A C T A G C G T A C T A G C G A T A G C T C G T A G A C T C G A T A G T C A C G T A G T C G A C T C G A T A C T G C A T G
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTTATTYTCTTGG
NANANTTAATCCCNNNN
 A C G T C T G A C T A G C G T A C T A G C G A T A G C T C G T A G A C T C G A T A G T C A C G T A G T C G A C T C G A T A C T G C A T G
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

Lhx3/MA0135.1/Jaspar

Match Rank:4
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTTATTYTCTTGG
GATTAATTAATTT-----
 A C G T A C G T C T G A C T A G C G T A C T A G C G A T A G C T C G T A G A C T C G A T A G T C A C G T A G T C G A C T C G A T A C T G C A T G
T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T A C G T A C G T A C G T A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:5
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AGAGTTATTYTCTTGG
TATAATTATAATATTC-
 A C G T C T G A C T A G C G T A C T A G C G A T A G C T C G T A G A C T C G A T A G T C A C G T A G T C G A C T C G A T A C T G C A T G
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C A C G T

PH0021.1_Dlx2/Jaspar

Match Rank:6
Score:0.49
Offset:-5
Orientation:reverse strand
Alignment:-----AGAGTTATTYTCTTGG
CTGANNTAATTATNNN-----
 A C G T A C G T A C G T A C G T A C G T C T G A C T A G C G T A C T A G C G A T A G C T C G T A G A C T C G A T A G T C A C G T A G T C G A C T C G A T A C T G C A T G
T A G C G A C T C A T G C T G A C T A G T A C G G A C T C G T A C G T A C G A T A C G T C T G A G A C T G A C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T

Dlx1/MA0879.1/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AGAGTTATTYTCTTGG
CCTAATTATC-------
 A C G T C T G A C T A G C G T A C T A G C G A T A G C T C G T A G A C T C G A T A G T C A C G T A G T C G A C T C G A T A C T G C A T G
T G A C T G A C G A C T T G C A G C T A C G A T A C G T G C T A A C G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:8
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---AGAGTTATTYTCTTGG
GACAGAGATATCAGTGT--
 A C G T A C G T A C G T C T G A C T A G C G T A C T A G C G A T A G C T C G T A G A C T C G A T A G T C A C G T A G T C G A C T C G A T A C T G C A T G
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T A C G T A C G T

Dlx2/MA0885.1/Jaspar

Match Rank:9
Score:0.48
Offset:0
Orientation:forward strand
Alignment:AGAGTTATTYTCTTGG
GCAATTAA--------
 C T G A C T A G C G T A C T A G C G A T A G C T C G T A G A C T C G A T A G T C A C G T A G T C G A C T C G A T A C T G C A T G
T A C G G A T C G T C A G T C A A C G T A C G T C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0022.1_Dlx3/Jaspar

Match Rank:10
Score:0.48
Offset:-5
Orientation:forward strand
Alignment:-----AGAGTTATTYTCTTGG
TCGCGATAATTACCGAC----
 A C G T A C G T A C G T A C G T A C G T C T G A C T A G C G T A C T A G C G A T A G C T C G T A G A C T C G A T A G T C A C G T A G T C G A C T C G A T A C T G C A T G
A C G T G T A C T C A G T G A C C A G T C T G A A G C T C G T A C G T A A C G T C A G T C T G A A G T C G T A C T A C G G C T A G T A C A C G T A C G T A C G T A C G T