Information for 5-ATGCTAAGCA (Motif 27)

C G T A C G A T C T A G G T A C A G C T C G T A C T G A C T A G A G T C C G T A
Reverse Opposite:
A C G T C T A G A G T C A G C T C G A T C T G A A C T G A G T C C G T A G C A T
p-value:1e-8
log p-value:-2.011e+01
Information Content per bp:1.750
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif137.0
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets51.4 +/- 25.0bp
Average Position of motif in Background50.3 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAAGCA-
TATGCWAATBAV
 A C G T C G T A C G A T C T A G G T A C A G C T C G T A C T G A C T A G A G T C C G T A A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAAGCA-
WATGCAAATGAG
 A C G T C G T A C G A T C T A G G T A C A G C T C G T A C T G A C T A G A G T C C G T A A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

FOXP3/MA0850.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATGCTAAGCA
---GTAAACA
 C G T A C G A T C T A G G T A C A G C T C G T A C T G A C T A G A G T C C G T A
A C G T A C G T A C G T C T A G G A C T C G T A C T G A T C G A A G T C C T G A

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAAGCA
GGTGCCAAGT-
 A C G T C G T A C G A T C T A G G T A C A G C T C G T A C T G A C T A G A G T C C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----ATGCTAAGCA-
NCCGTTGCTANGNGN
 A C G T A C G T A C G T A C G T C G T A C G A T C T A G G T A C A G C T C G T A C T G A C T A G A G T C C G T A A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

NRL/MA0842.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:ATGCTAAGCA----
---GTCAGCANNTN
 C G T A C G A T C T A G G T A C A G C T C G T A C T G A C T A G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATGCTAAGCA--
WWTRTAAACAVG
 C G T A C G A T C T A G G T A C A G C T C G T A C T G A C T A G A G T C C G T A A C G T A C G T
C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATGCTAAGCA---
KGTTGCTAGGMAACA
 A C G T A C G T C G T A C G A T C T A G G T A C A G C T C G T A C T G A C T A G A G T C C G T A A C G T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

FOXF2/MA0030.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATGCTAAGCA--
CAAACGTAAACAAT
 A C G T A C G T C G T A C G A T C T A G G T A C A G C T C G T A C T G A C T A G A G T C C G T A A C G T A C G T
A G T C G T C A G C T A C G T A T A G C C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A C G A T

POU1F1/MA0784.1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ATGCTAAGCA-
AATATGCAAATTAG
 A C G T A C G T A C G T C G T A C G A T C T A G G T A C A G C T C G T A C T G A C T A G A G T C C G T A A C G T
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G