Information for 3-CCGTRGCAGKCTC (Motif 17)

A G T C A G T C A T C G A G C T C T G A A C T G A G T C C G T A A C T G A C T G A G T C A C G T A G T C
Reverse Opposite:
A C T G G T C A A C T G G T A C A G T C A C G T A C T G A G T C A G C T C T G A A T G C A C T G A C T G
p-value:1e-9
log p-value:-2.269e+01
Information Content per bp:1.916
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.4 +/- 29.6bp
Average Position of motif in Background21.6 +/- 6.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0050.1_Osr1_1/Jaspar

Match Rank:1
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CCGTRGCAGKCTC
ATTTACAGTAGCAAAA--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T C G A G C T C T G A A C T G A G T C C G T A A C T G A C T G A G T C A C G T A G T C
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CCGTRGCAGKCTC
ATGTACAGTAGCAAAG--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T C G A G C T C T G A A C T G A G T C C G T A A C T G A C T G A G T C A C G T A G T C
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:3
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----CCGTRGCAGKCTC
TGATGACGTGGCAN----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T C G A G C T C T G A A C T G A G T C C G T A A C T G A C T G A G T C A C G T A G T C
G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.51
Offset:-7
Orientation:reverse strand
Alignment:-------CCGTRGCAGKCTC
YCAGGCWCAGTACCAGGCTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T C G A G C T C T G A A C T G A G T C C G T A A C T G A C T G A G T C A C G T A G T C
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCGTRGCAGKCTC
-CTTGGCAA----
 A G T C A G T C A T C G A G C T C T G A A C T G A G T C C G T A A C T G A C T G A G T C A C G T A G T C
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CCGTRGCAGKCTC
TACCATAGCAACGGT
 A C G T A C G T A G T C A G T C A T C G A G C T C T G A A C T G A G T C C G T A A C T G A C T G A G T C A C G T A G T C
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CCGTRGCAGKCTC
AGGTGHCAGACA-
 A G T C A G T C A T C G A G C T C T G A A C T G A G T C C G T A A C T G A C T G A G T C A C G T A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:CCGTRGCAGKCTC
-----BCAGACWA
 A G T C A G T C A T C G A G C T C T G A A C T G A G T C C G T A A C T G A C T G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CCGTRGCAGKCTC
-VBTGWCAGCB--
 A G T C A G T C A T C G A G C T C T G A A C T G A G T C C G T A A C T G A C T G A G T C A C G T A G T C
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CCGTRGCAGKCTC---
-AGCAACAGCCGCACC
 A G T C A G T C A T C G A G C T C T G A A C T G A G T C C G T A A C T G A C T G A G T C A C G T A G T C A C G T A C G T A C G T
A C G T T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C