Information for 22-TTGCTTTAGTGGC (Motif 40)

A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A G T C A C G T C G T A C G T A C G T A A C T G A G T C C G T A C G T A
p-value:1e-5
log p-value:-1.218e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.0 +/- 18.1bp
Average Position of motif in Background44.6 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTGCTTTAGTGGC----
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TTGCTTTAGTGGC-
---CTTGAGTGGCT
 A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TTGCTTTAGTGGC
---CTYRAGTGSY
 A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTGCTTTAGTGGC
---BTBRAGTGSN
 A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TTGCTTTAGTGGC
----TTAAGTGGT
 A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTGCTTTAGTGGC----
NTNNTTAAGTGGTTANN
 A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

NKX3-2/MA0122.2/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TTGCTTTAGTGGC
----TTAAGTGGN
 A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TTGCTTTAGTGGC-
----TTGAGTGSTT
 A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TTGCTTTAGTGGC
--NTTTTATTGG-
 A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G T C
A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TTGCTTTAGTGGC
--TTTTTATTGG-
 A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G T C
A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T