Information for 13-AATGCATTTA (Motif 39)

G T C A G T C A C G A T C T A G G T A C C G T A A C G T A C G T A G C T G C T A
Reverse Opposite:
C G A T C T G A G T C A C G T A C G A T A C T G A G T C G C T A C A G T C A G T
p-value:1e-5
log p-value:-1.338e+01
Information Content per bp:1.840
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.91%
Number of Background Sequences with motif418.9
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets35.3 +/- 21.0bp
Average Position of motif in Background51.2 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AATGCATTTA----
NNCATTCATTCATNNN
 A C G T A C G T G T C A G T C A C G A T C T A G G T A C C G T A A C G T A C G T A G C T G C T A A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AATGCATTTA----
NNNNTGAATTCANNNC
 A C G T A C G T G T C A G T C A C G A T C T A G G T A C C G T A A C G T A C G T A G C T G C T A A C G T A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AATGCATTTA-
---GCACTTAA
 G T C A G T C A C G A T C T A G G T A C C G T A A C G T A C G T A G C T G C T A A C G T
A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AATGCATTTA-
-ATGMATATDC
 G T C A G T C A C G A T C T A G G T A C C G T A A C G T A C G T A G C T G C T A A C G T
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AATGCATTTA-
TAATTNVATTAN
 A C G T G T C A G T C A C G A T C T A G G T A C C G T A A C G T A C G T A G C T G C T A A C G T
G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

Phox2b/MA0681.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AATGCATTTA
TAATTTAATTA
 A C G T G T C A G T C A C G A T C T A G G T A C C G T A A C G T A C G T A G C T G C T A
G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Barhl1/MA0877.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AATGCATTTA--
--NNCAATTANN
 G T C A G T C A C G A T C T A G G T A C C G T A A C G T A C G T A G C T G C T A A C G T A C G T
A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

BARHL2/MA0635.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AATGCATTTA--
--ANCGTTTANN
 G T C A G T C A C G A T C T A G G T A C C G T A A C G T A C G T A G C T G C T A A C G T A C G T
A C G T A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

PHOX2A/MA0713.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AATGCATTTA
TAATTTAATTA
 A C G T G T C A G T C A C G A T C T A G G T A C C G T A A C G T A C G T A G C T G C T A
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AATGCATTTA
GGGATTGCATNN-
 A C G T A C G T A C G T G T C A G T C A C G A T C T A G G T A C C G T A A C G T A C G T A G C T G C T A
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T A C G T