Information for 4-CACTCTGTGC (Motif 16)

A G T C C T G A T G A C C G A T A T G C G A C T T C A G C G A T T A C G A G T C
Reverse Opposite:
T C A G A T G C C G T A A G T C C T G A T A C G G C T A A C T G G A C T A C T G
p-value:1e-11
log p-value:-2.567e+01
Information Content per bp:1.612
Number of Target Sequences with motif135.0
Percentage of Target Sequences with motif17.86%
Number of Background Sequences with motif4680.3
Percentage of Background Sequences with motif9.78%
Average Position of motif in Targets51.9 +/- 24.6bp
Average Position of motif in Background50.6 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----CACTCTGTGC
VAGRACAKWCTGTYC
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A T G A C C G A T A T G C G A C T T C A G C G A T T A C G A G T C
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----CACTCTGTGC--
AGNACAGNCTGTTCTN
 A C G T A C G T A C G T A C G T A G T C C T G A T G A C C G A T A T G C G A C T T C A G C G A T T A C G A G T C A C G T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:3
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----CACTCTGTGC
VAGRACAKNCTGTBC
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A T G A C C G A T A T G C G A C T T C A G C G A T T A C G A G T C
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----CACTCTGTGC-
NAGNACANNNTGTNCT
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A T G A C C G A T A T G C G A C T T C A G C G A T T A C G A G T C A C G T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:5
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CACTCTGTGC
AAGAACATWHTGTTC
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A T G A C C G A T A T G C G A C T T C A G C G A T T A C G A G T C
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CACTCTGTGC--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T A G T C C T G A T G A C C G A T A T G C G A C T T C A G C G A T T A C G A G T C A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

NR3C2/MA0727.1/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CACTCTGTGC--
GGGAACATTGTGTTCCC
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A T G A C C G A T A T G C G A C T T C A G C G A T T A C G A G T C A C G T A C G T
C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

NR3C1/MA0113.3/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CACTCTGTGC--
NGGAACATNATGTACCC
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A T G A C C G A T A T G C G A C T T C A G C G A T T A C G A G T C A C G T A C G T
C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CACTCTGTGC
CCTGCTGAGH
 A G T C C T G A T G A C C G A T A T G C G A C T T C A G C G A T T A C G A G T C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CACTCTGTGC----
----CTGTTCCTGG
 A G T C C T G A T G A C C G A T A T G C G A C T T C A G C G A T T A C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G