Information for 7-SCTGCCAAAG (Motif 9)

A T G C A G T C C G A T C A T G T A G C G T A C G C T A T C G A C G T A C A T G
Reverse Opposite:
G T A C G C A T A C G T C G A T C A T G A T C G G T A C G C T A T C A G T A C G
p-value:1e-12
log p-value:-2.987e+01
Information Content per bp:1.456
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif890.0
Percentage of Background Sequences with motif4.49%
Average Position of motif in Targets45.6 +/- 25.7bp
Average Position of motif in Background50.4 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:SCTGCCAAAG
CTTGGCAA--
 A T G C A G T C C G A T C A T G T A G C G T A C G C T A T C G A C G T A C A T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:SCTGCCAAAG
GGTGCCAAGT
 A T G C A G T C C G A T C A T G T A G C G T A C G C T A T C G A C G T A C A T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:SCTGCCAAAG
CGTGCCAAG-
 A T G C A G T C C G A T C A T G T A G C G T A C G C T A T C G A C G T A C A T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:SCTGCCAAAG
--TGCCAA--
 A T G C A G T C C G A T C A T G T A G C G T A C G C T A T C G A C G T A C A T G
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:SCTGCCAAAG
GCTGTCAA--
 A T G C A G T C C G A T C A T G T A G C G T A C G C T A T C G A C G T A C A T G
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:SCTGCCAAAG
RHTGWCAR--
 A T G C A G T C C G A T C A T G T A G C G T A C G C T A T C G A C G T A C A T G
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:SCTGCCAAAG
CCTGTCAA--
 A T G C A G T C C G A T C A T G T A G C G T A C G C T A T C G A C G T A C A T G
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----SCTGCCAAAG-
AAAGACCTGTCAATAC
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T C A T G T A G C G T A C G C T A T C G A C G T A C A T G A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:SCTGCCAAAG
-ATGCCAACC
 A T G C A G T C C G A T C A T G T A G C G T A C G C T A T C G A C G T A C A T G
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----SCTGCCAAAG-
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T C A T G T A G C G T A C G C T A T C G A C G T A C A T G A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T