Information for 6-CTGCACAGTTTAT (Motif 4)

G T A C C G A T A T C G A G T C G T C A A G T C C G T A A C T G A G C T C A G T C G A T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A G C T A C T G A A G T C A C G T A C T G A C G T A C T G A T G C C G T A A C T G
p-value:1e-16
log p-value:-3.719e+01
Information Content per bp:1.779
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.4 +/- 28.9bp
Average Position of motif in Background14.3 +/- 9.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxq1/MA0040.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTGCACAGTTTAT-
---TATTGTTTATT
 G T A C C G A T A T C G A G T C G T C A A G T C C G T A A C T G A G C T C A G T C G A T C G T A A C G T A C G T
A C G T A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

POU4F1/MA0790.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGCACAGTTTAT-
ATGAATAATTAATG
 G T A C C G A T A T C G A G T C G T C A A G T C C G T A A C T G A G C T C A G T C G A T C G T A A C G T A C G T
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

POU4F2/MA0683.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGCACAGTTTAT---
ATGCATAATTAATGAG
 G T A C C G A T A T C G A G T C G T C A A G T C C G T A A C T G A G C T C A G T C G A T C G T A A C G T A C G T A C G T A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

POU4F3/MA0791.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGCACAGTTTAT---
ATGCATAATTAATGAG
 G T A C C G A T A T C G A G T C G T C A A G T C C G T A A C T G A G C T C A G T C G A T C G T A A C G T A C G T A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:CTGCACAGTTTAT---
-------TTTTATTGC
 G T A C C G A T A T C G A G T C G T C A A G T C C G T A A C T G A G C T C A G T C G A T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CTGCACAGTTTAT---
------NTTTTATGAC
 G T A C C G A T A T C G A G T C G T C A A G T C C G T A A C T G A G C T C A G T C G A T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTGCACAGTTTAT-------
----NAATTTTATTACCNNN
 G T A C C G A T A T C G A G T C G T C A A G T C C G T A A C T G A G C T C A G T C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

BARHL2/MA0635.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTGCACAGTTTAT-
----ANCGTTTANN
 G T A C C G A T A T C G A G T C G T C A A G T C C G T A A C T G A G C T C A G T C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CTGCACAGTTTAT----
-----DGWTTTATGRCN
 G T A C C G A T A T C G A G T C G T C A A G T C C G T A A C T G A G C T C A G T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:CTGCACAGTTTAT-----
-------TTTTATGGCTN
 G T A C C G A T A T C G A G T C G T C A A G T C C G T A A C T G A G C T C A G T C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T